Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4H51_RS07835 Genome accession   NZ_CP032480
Coordinates   1612376..1612657 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain 19-C-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607376..1617657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H51_RS07815 - 1608101..1609441 (-) 1341 WP_201737096.1 hypothetical protein -
  D4H51_RS07825 comB4 1609748..1612111 (-) 2364 WP_139544559.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4H51_RS07830 comB3 1612113..1612376 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4H51_RS07835 comB2 1612376..1612657 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  D4H51_RS07840 - 1612803..1613630 (-) 828 WP_001920389.1 DUF5718 family protein -
  D4H51_RS07845 - 1613723..1614775 (-) 1053 WP_139544560.1 MnmA/TRMU family protein -
  D4H51_RS07850 dnaG 1614772..1616451 (-) 1680 WP_139544561.1 DNA primase -
  D4H51_RS07860 groES 1616740..1617096 (+) 357 WP_139544562.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=316326 D4H51_RS07835 WP_001272686.1 1612376..1612657(-) (comB2) [Helicobacter pylori strain 19-C-EK1]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=316326 D4H51_RS07835 WP_001272686.1 1612376..1612657(-) (comB2) [Helicobacter pylori strain 19-C-EK1]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTGGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTTAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment