Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4I21_RS07120 Genome accession   NZ_CP032479
Coordinates   1444867..1445148 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain 21-F-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1439867..1450148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I21_RS07100 - 1440599..1441939 (-) 1341 WP_033756636.1 COG3014 family protein -
  D4I21_RS07110 comB4 1442239..1444602 (-) 2364 WP_139543463.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4I21_RS07115 comB3 1444604..1444867 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4I21_RS07120 comB2 1444867..1445148 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4I21_RS07125 - 1445294..1446121 (-) 828 WP_139543464.1 DUF5718 family protein -
  D4I21_RS07130 - 1446211..1447263 (-) 1053 WP_139543465.1 MnmA/TRMU family protein -
  D4I21_RS07135 dnaG 1447260..1448939 (-) 1680 WP_139543466.1 DNA primase -
  D4I21_RS07145 groES 1449226..1449582 (+) 357 WP_000671940.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=316303 D4I21_RS07120 WP_001272690.1 1444867..1445148(-) (comB2) [Helicobacter pylori strain 21-F-EK1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=316303 D4I21_RS07120 WP_001272690.1 1444867..1445148(-) (comB2) [Helicobacter pylori strain 21-F-EK1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment