Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4K17_RS01195 Genome accession   NZ_CP032477
Coordinates   240186..240449 (+) Length   87 a.a.
NCBI ID   WP_139521434.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-C-EK8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 235186..245449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K17_RS01165 groES 235483..235839 (-) 357 WP_097714113.1 co-chaperone GroES -
  D4K17_RS01175 dnaG 236114..237793 (+) 1680 WP_139521428.1 DNA primase -
  D4K17_RS01180 - 237790..238842 (+) 1053 WP_139521430.1 MnmA/TRMU family protein -
  D4K17_RS01185 - 238932..239759 (+) 828 WP_139521432.1 DUF5718 family protein -
  D4K17_RS01190 comB2 239905..240186 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4K17_RS01195 comB3 240186..240449 (+) 264 WP_139521434.1 competence protein ComB Machinery gene
  D4K17_RS01200 comB4 240451..242814 (+) 2364 WP_139521436.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K17_RS01210 - 243118..244458 (+) 1341 WP_198542850.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=316248 D4K17_RS01195 WP_139521434.1 240186..240449(+) (comB3) [Helicobacter pylori strain 169-C-EK8]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLVFLALFSALEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=316248 D4K17_RS01195 WP_139521434.1 240186..240449(+) (comB3) [Helicobacter pylori strain 169-C-EK8]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATCTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGTGT
TTTTAGCGCTCTTTAGTGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment