Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4K88_RS07435 Genome accession   NZ_CP032475
Coordinates   1508021..1508284 (-) Length   87 a.a.
NCBI ID   WP_120913629.1    Uniprot ID   -
Organism   Helicobacter pylori strain 381-F-EK9     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1503021..1513284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K88_RS07420 - 1504018..1505358 (-) 1341 WP_201737354.1 COG3014 family protein -
  D4K88_RS07430 comB4 1505656..1508019 (-) 2364 WP_139532749.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K88_RS07435 comB3 1508021..1508284 (-) 264 WP_120913629.1 competence protein ComB Machinery gene
  D4K88_RS07440 comB2 1508284..1508565 (-) 282 WP_139532751.1 TrbC/VirB2 family protein Machinery gene
  D4K88_RS07445 - 1508711..1509538 (-) 828 WP_139532752.1 DUF5718 family protein -
  D4K88_RS07450 - 1509632..1510684 (-) 1053 WP_139532754.1 MnmA/TRMU family protein -
  D4K88_RS07455 dnaG 1510681..1512360 (-) 1680 WP_139532756.1 DNA primase -
  D4K88_RS07465 groES 1512645..1513001 (+) 357 WP_000671963.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10094.17 Da        Isoelectric Point: 9.7585

>NTDB_id=316221 D4K88_RS07435 WP_120913629.1 1508021..1508284(-) (comB3) [Helicobacter pylori strain 381-F-EK9]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=316221 D4K88_RS07435 WP_120913629.1 1508021..1508284(-) (comB3) [Helicobacter pylori strain 381-F-EK9]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTAGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment