Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4L09_RS07575 Genome accession   NZ_CP032474
Coordinates   1530491..1530772 (-) Length   93 a.a.
NCBI ID   WP_101000542.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-C-EK5     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525491..1535772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L09_RS07555 - 1526202..1527542 (-) 1341 WP_201739194.1 COG3014 family protein -
  D4L09_RS07565 comB4 1527863..1530226 (-) 2364 WP_139546593.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4L09_RS07570 comB3 1530228..1530491 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4L09_RS07575 comB2 1530491..1530772 (-) 282 WP_101000542.1 TrbC/VirB2 family protein Machinery gene
  D4L09_RS07580 - 1530918..1531745 (-) 828 WP_139542493.1 DUF5718 family protein -
  D4L09_RS07585 - 1531836..1532888 (-) 1053 WP_139542494.1 MnmA/TRMU family protein -
  D4L09_RS07590 dnaG 1532885..1534564 (-) 1680 WP_139542495.1 DNA primase -
  D4L09_RS07600 groES 1534848..1535204 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10479.71 Da        Isoelectric Point: 9.1450

>NTDB_id=316201 D4L09_RS07575 WP_101000542.1 1530491..1530772(-) (comB2) [Helicobacter pylori strain 476-C-EK5]
MSAHFLKIIFLVGMCVSSLSAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=316201 D4L09_RS07575 WP_101000542.1 1530491..1530772(-) (comB2) [Helicobacter pylori strain 476-C-EK5]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTCCGCTGAAGGTTTAGAGGGTTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACAATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment