Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4L53_RS07355 Genome accession   NZ_CP032472
Coordinates   1505501..1505782 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-A2-EK4     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500501..1510782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L53_RS07335 - 1501212..1502552 (-) 1341 WP_180339199.1 COG3014 family protein -
  D4L53_RS07345 comB4 1502873..1505236 (-) 2364 WP_139518926.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4L53_RS07350 comB3 1505238..1505501 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  D4L53_RS07355 comB2 1505501..1505782 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4L53_RS07360 - 1505929..1506756 (-) 828 WP_139518927.1 DUF5718 family protein -
  D4L53_RS07365 - 1506846..1507898 (-) 1053 WP_139518928.1 MnmA/TRMU family protein -
  D4L53_RS07370 dnaG 1507895..1509574 (-) 1680 WP_139518929.1 DNA primase -
  D4L53_RS07380 groES 1509848..1510204 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=316161 D4L53_RS07355 WP_001272690.1 1505501..1505782(-) (comB2) [Helicobacter pylori strain 479-A2-EK4]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=316161 D4L53_RS07355 WP_001272690.1 1505501..1505782(-) (comB2) [Helicobacter pylori strain 479-A2-EK4]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTGGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment