Detailed information NTG0000316

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: STER_RS05545
• Genome accession: NC_008532
• Coordinates: 1035422..1036303 (-)
• Length: 293 a.a.
• NCBI ID: WP_011681210.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus LMD-9
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1030422..1041303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STER_RS05520 (STER_1116)	vicR	1031129..1031836 (-)	708	WP_011681206.1	response regulator YycF	Regulator
STER_RS05525 (STER_1117)	-	1032360..1033127 (+)	768	WP_011681207.1	amino acid ABC transporter ATP-binding protein	-
STER_RS05530 (STER_1118)	-	1033139..1033972 (+)	834	WP_011681208.1	transporter substrate-binding domain-containing protein	-
STER_RS05535 (STER_1119)	-	1033990..1034688 (+)	699	WP_011681209.1	amino acid ABC transporter permease	-
STER_RS05540 (STER_1120)	-	1034700..1035350 (+)	651	WP_011226088.1	amino acid ABC transporter permease	-
STER_RS05545 (STER_1121)	endA	1035422..1036303 (-)	882	WP_011681210.1	DNA/RNA non-specific endonuclease	Machinery gene
STER_RS05550 (STER_1122)	-	1036365..1036553 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-
STER_RS05555 (STER_1123)	murA	1036555..1037826 (-)	1272	WP_011681211.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
STER_RS05560 (STER_1124)	-	1037896..1038132 (-)	237	WP_002946959.1	DUF1146 family protein	-
STER_RS05565 (STER_1125)	galE	1038321..1039334 (-)	1014	WP_011681212.1	UDP-glucose 4-epimerase GalE	-
STER_RS09880 (STER_1126)	-	1039349..1039852 (-)	504	WP_011681213.1	hypothetical protein	-
STER_RS09885 (STER_1127)	-	1039842..1040294 (-)	453	WP_011681214.1	hypothetical protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31773.50 Da
• Isoelectric Point: 10.1789

>NTDB_id=316 STER_RS05545 WP_011681210.1 1035422..1036303(-) (endA) [Streptococcus thermophilus LMD-9]
MAKRKTSLTNKQKRQLVTLIIAALIAVLGYLGTSNKLSPDNPIRQVASLVSGKSNKSIKSNGSTNSQSTPQEQLAETVMT
SSVKSQLGNSLEWNGAGAYIINRNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVQNLSGEYSHAVDRGHLLGYALIGGLKGFDASTSNPENIAVQTAWANQAYSDSSTGQNYYESLVRKALDKNKRVR
YRVTLIYEGENLIPSGTHLEAKSADGSLEFNVFVPNVQEGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=316 STER_RS05545 WP_011681210.1 1035422..1036303(-) (endA) [Streptococcus thermophilus LMD-9]
ATGGCAAAAAGAAAGACATCTTTGACAAATAAACAGAAACGTCAGTTAGTCACATTAATAATAGCAGCTTTGATAGCTGT
TTTAGGTTACCTAGGAACCAGTAACAAGCTCTCGCCTGATAATCCTATCAGACAAGTAGCAAGCCTAGTTTCAGGGAAAT
CTAACAAATCCATTAAATCTAATGGTTCAACAAATAGTCAGTCTACACCACAAGAGCAGCTTGCTGAGACAGTAATGACT
AGTTCAGTCAAAAGCCAACTGGGTAATTCCTTGGAATGGAATGGAGCTGGGGCCTACATTATTAATAGAAATAAGACGAA
TCTAAATGCTAAGGTATCAAGCCAACCCTATGCTAATAACCAAGTCAAAACGGTTCAAGGACAAACTGTTCCTACAGTTG
CTAATGCCTTATTAAGTAAAGCAACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGTTCAACCTCTTGGACACCA
GCTGGATGGCACCAGGTTCAAAATTTATCAGGAGAGTATAGCCATGCCGTAGATAGAGGCCATTTGCTAGGTTATGCACT
GATAGGTGGTTTGAAAGGATTTGATGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCAAATCAAG
CATATAGCGATAGTTCTACAGGCCAAAACTATTATGAAAGCCTAGTACGAAAAGCTCTGGATAAAAACAAACGTGTTCGT
TATCGTGTGACCCTGATTTATGAAGGAGAGAATCTCATTCCATCAGGAACACATCTTGAAGCTAAGTCAGCAGACGGCTC
ACTTGAGTTTAATGTCTTTGTTCCAAATGTACAAGAGGGAATTACACTAGATTACTATTCAGGAAAAGTAACGGTGAATT
GA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (101-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	72.803	81.57	0.594
endA	Streptococcus pneumoniae D39	72.803	81.57	0.594
endA	Streptococcus pneumoniae R6	72.803	81.57	0.594
endA	Streptococcus pneumoniae TIGR4	72.803	81.57	0.594