Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLW34_RS01945 Genome accession   NZ_CP032430
Coordinates   378541..379479 (+) Length   312 a.a.
NCBI ID   WP_011677085.1    Uniprot ID   -
Organism   Lactococcus cremoris strain W34     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373541..384479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLW34_RS01920 (LLW34_0368) - 373695..374081 (+) 387 WP_011677097.1 rhodanese-like domain-containing protein -
  LLW34_RS01925 (LLW34_0369) - 374197..374643 (-) 447 WP_205288276.1 DNA starvation/stationary phase protection protein -
  LLW34_RS01930 (LLW34_0371) - 374838..375949 (+) 1112 WP_205287927.1 IS3-like element IS981 family transposase -
  LLW34_RS01935 (LLW34_0372) typA 376269..378101 (+) 1833 WP_031286284.1 translational GTPase TypA -
  LLW34_RS01940 (LLW34_0373) - 378202..378453 (+) 252 WP_011677086.1 DUF3165 family protein -
  LLW34_RS01945 (LLW34_0374) comYH 378541..379479 (+) 939 WP_011677085.1 class I SAM-dependent methyltransferase Machinery gene
  LLW34_RS01950 (LLW34_0375) - 379671..380858 (+) 1188 WP_011677084.1 acetate kinase -
  LLW34_RS01955 (LLW34_0376) - 381017..382205 (+) 1189 Protein_375 acetate kinase -
  LLW34_RS01960 (LLW34_0377) - 382335..382787 (+) 453 WP_205288277.1 hypothetical protein -
  LLW34_RS01965 (LLW34_0378) pyrH 382872..383588 (+) 717 WP_004254608.1 UMP kinase -
  LLW34_RS01970 (LLW34_0379) frr 383744..384301 (+) 558 WP_011677081.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34694.69 Da        Isoelectric Point: 4.3603

>NTDB_id=315801 LLW34_RS01945 WP_011677085.1 378541..379479(+) (comYH) [Lactococcus cremoris strain W34]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=315801 LLW34_RS01945 WP_011677085.1 378541..379479(+) (comYH) [Lactococcus cremoris strain W34]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.882

100

0.49

Multiple sequence alignment