Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLW34_RS00915 Genome accession   NZ_CP032430
Coordinates   171729..172517 (+) Length   262 a.a.
NCBI ID   WP_205288232.1    Uniprot ID   -
Organism   Lactococcus cremoris strain W34     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 166729..177517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLW34_RS00890 (LLW34_0166) - 167090..167980 (+) 891 WP_205288230.1 IS982-like element IS982B family transposase -
  LLW34_RS00895 (LLW34_0167) - 168054..168263 (+) 210 WP_010905160.1 hypothetical protein -
  LLW34_RS00900 (LLW34_0168) - 168275..168514 (+) 240 WP_010905161.1 hypothetical protein -
  LLW34_RS00905 (LLW34_0169) - 168711..170294 (+) 1584 WP_205288231.1 APC family permease -
  LLW34_RS00910 (LLW34_0170) - 170362..171576 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  LLW34_RS00915 (LLW34_0171) codY 171729..172517 (+) 789 WP_205288232.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLW34_RS00920 (LLW34_0172) gatC 173357..173662 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLW34_RS00925 (LLW34_0173) gatA 173662..175128 (+) 1467 WP_021210934.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLW34_RS00930 (LLW34_0174) gatB 175128..176561 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29172.47 Da        Isoelectric Point: 4.4768

>NTDB_id=315799 LLW34_RS00915 WP_205288232.1 171729..172517(+) (codY) [Lactococcus cremoris strain W34]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLDDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVVASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=315799 LLW34_RS00915 WP_205288232.1 171729..172517(+) (codY) [Lactococcus cremoris strain W34]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATTTTCCCAGAAGAAAGTCT
TGACGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTGTCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.237

100

0.992
  codY Bacillus subtilis subsp. subtilis str. 168

48.425

96.947

0.469

Multiple sequence alignment