Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   D3X10_RS07295 Genome accession   NZ_CP032415
Coordinates   1436427..1437539 (-) Length   370 a.a.
NCBI ID   WP_025887558.1    Uniprot ID   A0A379YLK5
Organism   Shewanella algae strain VGH117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431427..1442539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3X10_RS07270 (D3X10_07330) - 1431477..1432607 (-) 1131 WP_144225273.1 aminotransferase class V-fold PLP-dependent enzyme -
  D3X10_RS07275 (D3X10_07335) - 1432618..1433352 (-) 735 WP_096141503.1 tryptophan 2,3-dioxygenase family protein -
  D3X10_RS07280 (D3X10_07340) hemH 1433524..1434537 (-) 1014 WP_107005680.1 ferrochelatase -
  D3X10_RS07285 (D3X10_07345) - 1434572..1435153 (-) 582 WP_117200437.1 glutathione peroxidase -
  D3X10_RS07290 (D3X10_07350) - 1435193..1436302 (-) 1110 WP_117200436.1 hypothetical protein -
  D3X10_RS07295 (D3X10_07355) pilU 1436427..1437539 (-) 1113 WP_025887558.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  D3X10_RS07300 (D3X10_07360) pilT 1437549..1438586 (-) 1038 WP_025009461.1 type IV pilus twitching motility protein PilT Machinery gene
  D3X10_RS07305 (D3X10_07365) - 1438623..1439318 (+) 696 WP_025009462.1 YggS family pyridoxal phosphate-dependent enzyme -
  D3X10_RS07310 (D3X10_07370) proC 1439451..1440269 (+) 819 WP_117200435.1 pyrroline-5-carboxylate reductase -
  D3X10_RS07315 (D3X10_07375) - 1440293..1440844 (+) 552 WP_044733985.1 YggT family protein -
  D3X10_RS07320 (D3X10_07380) yggU 1440844..1441131 (+) 288 WP_037467122.1 DUF167 family protein YggU -
  D3X10_RS07325 (D3X10_07385) - 1441194..1441628 (+) 435 WP_025887551.1 DUF4426 domain-containing protein -
  D3X10_RS07330 (D3X10_07390) rdgB 1441848..1442449 (+) 602 Protein_1255 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 41041.12 Da        Isoelectric Point: 6.3709

>NTDB_id=315620 D3X10_RS07295 WP_025887558.1 1436427..1437539(-) (pilU) [Shewanella algae strain VGH117]
MEVRPFLKAMVDRKASDLFITAAFPPSAKVDGELRPLAENAFTPAQSLEFVESLMTPEQKKEFHETRECNFAVGAKELGR
FRVSAFWQRESAGCVMRRIETKIPTVEQLYLPPILKDLVMSKRGLVIMVGGTGTGKSTSLAALIGYRNANARGHILTIED
PVEFVHQHGKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI
MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKVDGSGRRAAIEVLINTPRVASLIQKNELHVLKDTMAKSNEQGMQTFDQA
LFKLYCEGEISYADALHHADSPNDLRLMIKLHSNDTGNSGFMEGVTLDMD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=315620 D3X10_RS07295 WP_025887558.1 1436427..1437539(-) (pilU) [Shewanella algae strain VGH117]
ATGGAAGTCAGACCTTTTCTCAAAGCCATGGTGGATCGCAAGGCCTCGGATCTCTTTATTACCGCCGCCTTTCCTCCCAG
TGCCAAGGTGGACGGTGAACTCAGGCCGCTGGCGGAAAACGCCTTTACCCCGGCGCAGTCGCTGGAGTTTGTTGAGTCTT
TGATGACGCCGGAGCAGAAAAAGGAGTTTCACGAGACCCGCGAATGTAACTTTGCCGTGGGCGCCAAAGAGCTGGGGCGT
TTCCGGGTCAGTGCCTTCTGGCAACGGGAGTCGGCGGGCTGCGTGATGCGGCGTATCGAAACCAAGATCCCTACTGTGGA
GCAGCTGTACCTGCCGCCCATTCTCAAAGACTTGGTAATGAGCAAGCGCGGATTGGTGATCATGGTAGGGGGAACCGGTA
CGGGTAAGTCCACCTCGCTGGCGGCACTTATCGGTTACCGTAATGCTAATGCCAGGGGACACATACTCACCATCGAAGAT
CCGGTGGAATTTGTTCACCAACACGGCAAGAGCATTATCACCCAGCGGGAAGTGGGTATAGATACCGAGTCGTTTGATGC
GGCGCTCAAGAGCTCATTGCGCCAGGCGCCGGACGTTATCCTTATCGGTGAGATCCGTACCCAGGAAACCATGGAGTTTG
CCCTGTCGTTCGCCGAAACCGGCCACTTGTGTATGGCAACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATGCACCTGGTGCCAGAGAGTAAGCACCAACAACTGCTATTTGACCTGTCGCTTAACTTGCGCGGTATTGTGGCCCAGCA
GTTGGTGCCCAAGGTGGACGGCAGCGGCCGGCGCGCCGCCATCGAAGTGCTGATCAACACCCCCAGGGTGGCCAGTCTTA
TTCAAAAGAACGAGCTGCACGTGCTCAAGGACACCATGGCCAAGTCCAACGAGCAGGGGATGCAAACCTTCGACCAGGCG
TTGTTCAAGCTCTACTGTGAAGGGGAGATCAGCTACGCCGATGCACTGCATCATGCCGACTCGCCAAACGACCTGCGACT
CATGATTAAACTCCACAGCAATGACACCGGCAATTCAGGTTTCATGGAGGGAGTTACCCTGGATATGGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379YLK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

61.995

100

0.622
  pilU Vibrio cholerae strain A1552

58.649

100

0.586
  pilU Acinetobacter baylyi ADP1

59.375

95.135

0.565
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.58

93.243

0.378
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

42.121

89.189

0.376
  pilT Vibrio cholerae strain A1552

42.121

89.189

0.376
  pilT Legionella pneumophila strain Lp02

41.692

89.459

0.373
  pilT Legionella pneumophila strain ERS1305867

41.692

89.459

0.373
  pilT Acinetobacter baumannii D1279779

40.351

92.432

0.373
  pilT Acinetobacter baumannii strain A118

40.351

92.432

0.373
  pilT Acinetobacter nosocomialis M2

40.351

92.432

0.373
  pilT Acinetobacter baylyi ADP1

39.181

92.432

0.362

Multiple sequence alignment