Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   D4A37_RS23080 Genome accession   NZ_CP032365
Coordinates   4424523..4426862 (-) Length   779 a.a.
NCBI ID   WP_000941221.1    Uniprot ID   A0A1D3P6H6
Organism   Bacillus wiedmannii strain SR52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4419523..4431862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS29670 - 4420665..4420841 (-) 177 WP_001242605.1 hypothetical protein -
  D4A37_RS23065 - 4421111..4421551 (-) 441 WP_001266955.1 D-tyrosyl-tRNA(Tyr) deacylase -
  D4A37_RS23070 relA 4421569..4423752 (-) 2184 WP_001262796.1 GTP diphosphokinase -
  D4A37_RS23075 - 4423963..4424475 (-) 513 WP_000346221.1 adenine phosphoribosyltransferase -
  D4A37_RS23080 recJ 4424523..4426862 (-) 2340 WP_000941221.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  D4A37_RS23085 - 4426964..4427857 (-) 894 WP_000409733.1 cation diffusion facilitator family transporter -
  D4A37_RS23090 secDF 4428014..4430278 (-) 2265 WP_001119055.1 protein translocase subunit SecDF -
  D4A37_RS23095 - 4430549..4430833 (-) 285 WP_000890214.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88211.88 Da        Isoelectric Point: 5.0029

>NTDB_id=315209 D4A37_RS23080 WP_000941221.1 4424523..4426862(-) (recJ) [Bacillus wiedmannii strain SR52]
MLQPKTRWKEKEYNDERVSELASKLKLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGANVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVEHNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNIEANVAELPKEKITMVYFSEEVLNKFSLEDFKEHMMHASEVTHLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=315209 D4A37_RS23080 WP_000941221.1 4424523..4426862(-) (recJ) [Bacillus wiedmannii strain SR52]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGACGAGCGAGTGAGTGAATTAGCAAGTAAATTAAAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCTTTGCAAGAATT
AGGTGCAAATGTAGAATTTTATATCCCAAACCGTTTCACAGAAGGTTATGGACCAAACGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTCTCACTAATTATTACTGTCGATACTGGTATCGCAGCAGTACATGAAGCGAAGGTAGCGAAGGAGCTT
GGAATAGATCTTATTATTACAGATCACCATGAGCCACCACCAGAATTGCCAGAAGCACTTGCGATTATTCATCCTAAATT
AGATGGCGGTGTATATCCGTTTCACTATTTAGCTGGTGTAGGTGTTGCATTTAAAGTTGCACATGCACTACTAGGTCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACAGTAGCCGATTTAGTGTCACTTCATGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAGCATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGCATTGGATTCTCACTCGCACCGCGCATTAATGCAGTTGGCCGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGATGATCCAGAAGAAGCGAAAGAGCTAGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAACATAATTTCCCGCCAGAAGACAATAAAGT
ACTAGTACTGGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCATCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACGGCAAAAGGTTCAGCACGTAGTATTGCAGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTGCGCCGCCGCTTAAATGAACAAGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTTGATGTCTTTTGTAAAGTGGAGGATGTAACACTGGCAGCAATTGAAGACATGCAAAAGTTAGCGCCATTTGGTGTT
GGGAATCCAAAACCGCGTATTGCAGTGAAGGATGCAGAGTTAGAAAGTATTCGTGCAATCGGATCAGATGGCTCTCATTT
GAAAATGGCTCTTCGCGATGGACAAGCGACACTGGATACAATCGGATTTGGATTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGAGAAGCATCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAGGCGTGGCAATTATTTGATTGGCGTAGTATGCGTAACATAGAAGCGAATGTAGCAGAACTTCCGAA
AGAAAAAATAACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTTTAAAGAGCATATGATGC
ATGCATCAGAAGTGACTCATTTAGACGATCAATACATCGTGTTACTTGATTTGCCAAAAGGAACAGATGAATTAAGAGAT
TTATTTAAAGTTGGGTTCCCGTCGCGAATTTATACGCTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGGGAACATTTTAAATGGTACTATTCGTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATATGGAGAACAGCTAT
GTCGACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3P6H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.972

99.358

0.526

Multiple sequence alignment