Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   D4A37_RS23015 Genome accession   NZ_CP032365
Coordinates   4407888..4410224 (-) Length   778 a.a.
NCBI ID   WP_000528051.1    Uniprot ID   A0AAU8F933
Organism   Bacillus wiedmannii strain SR52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4402888..4415224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS22990 - 4405550..4405894 (+) 345 WP_000209469.1 PH domain-containing protein -
  D4A37_RS22995 - 4405933..4407000 (-) 1068 WP_000793120.1 AI-2E family transporter -
  D4A37_RS23000 - 4407177..4407389 (+) 213 WP_000242555.1 hypothetical protein -
  D4A37_RS23005 - 4407425..4407553 (-) 129 WP_001053553.1 YrzQ family protein -
  D4A37_RS23010 - 4407572..4407760 (-) 189 WP_000469281.1 hypothetical protein -
  D4A37_RS23015 recD2 4407888..4410224 (-) 2337 WP_000528051.1 ATP-dependent RecD-like DNA helicase Machinery gene
  D4A37_RS23020 - 4410321..4410980 (-) 660 WP_000066396.1 tetratricopeptide repeat protein -
  D4A37_RS23025 mnmA 4411091..4412206 (-) 1116 WP_001038022.1 tRNA 2-thiouridine(34) synthase MnmA -
  D4A37_RS23030 - 4412223..4413368 (-) 1146 WP_000439915.1 cysteine desulfurase family protein -
  D4A37_RS23035 - 4413404..4413820 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87234.71 Da        Isoelectric Point: 5.2570

>NTDB_id=315208 D4A37_RS23015 WP_000528051.1 4407888..4410224(-) (recD2) [Bacillus wiedmannii strain SR52]
MGNQHAMDLFEEDKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLSVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=315208 D4A37_RS23015 WP_000528051.1 4407888..4410224(-) (recD2) [Bacillus wiedmannii strain SR52]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGATAAAAAGTTTATAAAAGCGCAAGTTCTTCACACCATTTTCCA
CAATGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTGGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATTGGAAAGCGTACTGCTGAAAAAATTGTTGACCATCTCGGAGAACATGCTATTTCTAAAATTATGGACG
ATCCTGATGCGTTAAATGGTGTTGTTAACAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGACTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACGTTAGAAGTGATTCGTAATAATCCGTATAAGCTTATTGAAGAAGTGGACGGGATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGAATATCGGGTAATCACGATGATCGTGTACGTGCAGGGTGTTTTTATACGCTAGAGAATGTTTCG
CTGCAACTCGGTCACGTTTATATGGGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAACCAAGAAGGAAG
AGTGACAGAGGAAGACATTATAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAGGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAGTGTACAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTCCACGGATTATCGTTAAATCCGAATGAATATAGCGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCAGCAAAGCGAATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGCTT
ACTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACGGATCCGGTTCAAGGGAAGTTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACGAACATCCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTACCATCTGTAGGGCCTGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCGACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCGTTTATCGGCTGTACAGGAGCTCAAATTGTTGAAGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGCCCTGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ATCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGCATTGAAGTAACATATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTACACTGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCCAGTCTGGTGTAAATCGACTTGATGATGCAATGCGTCAAACGACTTTAGC
GGGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.637

100

0.576

Multiple sequence alignment