Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D4A37_RS19825 Genome accession   NZ_CP032365
Coordinates   3852090..3852869 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus wiedmannii strain SR52     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3849753..3885132 3852090..3852869 within 0


Gene organization within MGE regions


Location: 3849753..3885132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS19815 tsf 3850046..3850933 (-) 888 WP_001018585.1 translation elongation factor Ts -
  D4A37_RS19820 rpsB 3851037..3851738 (-) 702 WP_000111484.1 30S ribosomal protein S2 -
  D4A37_RS19825 codY 3852090..3852869 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D4A37_RS19830 hslU 3852947..3854338 (-) 1392 WP_000550070.1 ATP-dependent protease ATPase subunit HslU -
  D4A37_RS19835 hslV 3854361..3854903 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  D4A37_RS19840 xerC 3854947..3855846 (-) 900 WP_001101235.1 tyrosine recombinase XerC -
  D4A37_RS19845 trmFO 3855912..3857216 (-) 1305 WP_000211996.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D4A37_RS19850 topA 3857265..3859343 (-) 2079 WP_001286953.1 type I DNA topoisomerase -
  D4A37_RS19855 dprA 3859488..3860357 (-) 870 WP_000818023.1 DNA-processing protein DprA -
  D4A37_RS19860 sucD 3860445..3861347 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  D4A37_RS19865 sucC 3861367..3862527 (-) 1161 WP_001020778.1 ADP-forming succinate--CoA ligase subunit beta -
  D4A37_RS19870 - 3862722..3863495 (-) 774 WP_001174726.1 ribonuclease HII -
  D4A37_RS19875 ylqF 3863547..3864437 (-) 891 WP_000236708.1 ribosome biogenesis GTPase YlqF -
  D4A37_RS19880 lepB 3864458..3865009 (-) 552 WP_000711855.1 signal peptidase I -
  D4A37_RS19885 rplS 3865111..3865455 (-) 345 WP_001186518.1 50S ribosomal protein L19 -
  D4A37_RS19890 trmD 3865602..3866336 (-) 735 WP_000686894.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  D4A37_RS19895 rimM 3866336..3866851 (-) 516 WP_000170282.1 ribosome maturation factor RimM -
  D4A37_RS19900 - 3866973..3867200 (-) 228 WP_000737397.1 KH domain-containing protein -
  D4A37_RS19905 rpsP 3867215..3867487 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  D4A37_RS19910 ffh 3867588..3868937 (-) 1350 WP_000863466.1 signal recognition particle protein -
  D4A37_RS19915 - 3868950..3869282 (-) 333 WP_000891061.1 putative DNA-binding protein -
  D4A37_RS19920 ftsY 3869416..3870405 (-) 990 WP_000007661.1 signal recognition particle-docking protein FtsY -
  D4A37_RS19925 smc 3870421..3873990 (-) 3570 WP_000478994.1 chromosome segregation protein SMC -
  D4A37_RS19930 rncS 3874138..3874875 (-) 738 WP_001146867.1 ribonuclease III -
  D4A37_RS19935 acpP 3874934..3875167 (-) 234 WP_000786062.1 acyl carrier protein -
  D4A37_RS19940 fabG 3875237..3875977 (-) 741 WP_000911777.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  D4A37_RS19945 fabD 3875977..3876921 (-) 945 WP_000516944.1 ACP S-malonyltransferase -
  D4A37_RS19950 plsX 3876936..3877928 (-) 993 WP_000684108.1 phosphate acyltransferase PlsX -
  D4A37_RS19955 fapR 3877925..3878518 (-) 594 WP_000747352.1 transcription factor FapR -
  D4A37_RS19960 recG 3878607..3880655 (-) 2049 WP_001006891.1 ATP-dependent DNA helicase RecG -
  D4A37_RS19965 - 3880939..3882615 (-) 1677 WP_000027123.1 DAK2 domain-containing protein -
  D4A37_RS19970 - 3882638..3883000 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  D4A37_RS19975 rpmB 3883376..3883564 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  D4A37_RS19980 spoVM 3883638..3883718 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  D4A37_RS19985 - 3883785..3884465 (-) 681 WP_002096352.1 thiamine diphosphokinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=315200 D4A37_RS19825 WP_000421290.1 3852090..3852869(-) (codY) [Bacillus wiedmannii strain SR52]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=315200 D4A37_RS19825 WP_000421290.1 3852090..3852869(-) (codY) [Bacillus wiedmannii strain SR52]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGAGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment