Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   D3Z18_RS08860 Genome accession   NZ_CP032316
Coordinates   1635715..1636230 (-) Length   171 a.a.
NCBI ID   WP_002912539.1    Uniprot ID   A0A5T1DYA4
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630715..1641230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS08845 (D3Z18_08845) - 1630827..1632644 (-) 1818 WP_052823966.1 motility associated factor glycosyltransferase family protein -
  D3Z18_RS08850 (D3Z18_08850) - 1632641..1634464 (-) 1824 WP_038401605.1 motility associated factor glycosyltransferase family protein -
  D3Z18_RS08855 (D3Z18_08855) - 1634474..1635715 (-) 1242 WP_002912544.1 DUF2920 family protein -
  D3Z18_RS08860 (D3Z18_08860) ctsG 1635715..1636230 (-) 516 WP_002912539.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  D3Z18_RS08865 (D3Z18_08865) tsaD 1636231..1637238 (-) 1008 WP_002912534.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  D3Z18_RS08870 (D3Z18_08870) - 1637235..1638629 (-) 1395 WP_038401610.1 M99 family carboxypeptidase catalytic domain-containing protein -
  D3Z18_RS08875 (D3Z18_08875) dxr 1638631..1639701 (-) 1071 WP_002898669.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  D3Z18_RS08880 (D3Z18_08880) cdsA 1639698..1640423 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  D3Z18_RS08885 (D3Z18_08885) - 1640432..1640770 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18719.61 Da        Isoelectric Point: 6.4693

>NTDB_id=314990 D3Z18_RS08860 WP_002912539.1 1635715..1636230(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain HPC5]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISNNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=314990 D3Z18_RS08860 WP_002912539.1 1635715..1636230(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAACAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1DYA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment