Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HELPY_RS05475 Genome accession   NC_012973
Coordinates   1130611..1131384 (+) Length   257 a.a.
NCBI ID   WP_000404509.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1125611..1136384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS05470 (HELPY_1131) hopL 1126921..1130598 (+) 3678 WP_000591212.1 Hop family outer membrane protein HopL -
  HELPY_RS05475 (HELPY_1132) proC 1130611..1131384 (+) 774 WP_000404509.1 pyrroline-5-carboxylate reductase Machinery gene
  HELPY_RS05480 (HELPY_1133) fic 1131411..1131944 (+) 534 WP_000549912.1 protein adenylyltransferase Fic -
  HELPY_RS05485 (HELPY_1134) ybeY 1132190..1132612 (-) 423 WP_000889547.1 rRNA maturation RNase YbeY -
  HELPY_RS05490 (HELPY_1135) - 1132666..1133160 (-) 495 WP_000516050.1 flavodoxin -
  HELPY_RS05495 (HELPY_1136) - 1133252..1133833 (-) 582 WP_033737063.1 DedA family protein -
  HELPY_RS05500 (HELPY_1137) ccoS 1133967..1134158 (+) 192 WP_001090951.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HELPY_RS05505 (HELPY_1138) - 1134184..1135155 (+) 972 WP_000371799.1 NAD(P)-binding domain-containing protein -
  HELPY_RS05510 (HELPY_1139) - 1135162..1136322 (-) 1161 WP_000944783.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28230.86 Da        Isoelectric Point: 8.0301

>NTDB_id=31419 HELPY_RS05475 WP_000404509.1 1130611..1131384(+) (proC) [Helicobacter pylori B38]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVMPSISEKALNIIESFGNCVRVGNEEQVD
ASIATNGSTLAFLSLVASGLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=31419 HELPY_RS05475 WP_000404509.1 1130611..1131384(+) (proC) [Helicobacter pylori B38]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATCTTAGAAGGCTCGCATGAAATTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAATCTTAAGGACTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGTATGCCCAATATTGCGAGCAAATTCGCCCTATCTTCTACGGCGGTGTGTGAAAAATCGGTTATGC
CTTCAATAAGTGAGAAAGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCACGCTCGCTTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362

Multiple sequence alignment