Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LL1196_RS00835 Genome accession   NZ_CP032148
Coordinates   153533..154321 (+) Length   262 a.a.
NCBI ID   WP_021215206.1    Uniprot ID   A0A896T708
Organism   Lactococcus cremoris strain 1196     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 148533..159321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL1196_RS00810 (LL1196_0146) - 148864..149655 (+) 792 WP_021215202.1 DNA/RNA non-specific endonuclease -
  LL1196_RS00815 (LL1196_0147) - 149858..150067 (+) 210 WP_021215203.1 hypothetical protein -
  LL1196_RS00820 (LL1196_0148) - 150079..150318 (+) 240 WP_021215204.1 hypothetical protein -
  LL1196_RS00825 (LL1196_0149) - 150515..152098 (+) 1584 WP_021215205.1 APC family permease -
  LL1196_RS00830 (LL1196_0150) - 152166..153380 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  LL1196_RS00835 (LL1196_0151) codY 153533..154321 (+) 789 WP_021215206.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LL1196_RS00840 (LL1196_0152) gatC 155299..155604 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LL1196_RS00845 (LL1196_0153) gatA 155604..157070 (+) 1467 WP_021210934.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LL1196_RS00850 (LL1196_0154) gatB 157070..158503 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29186.54 Da        Isoelectric Point: 4.5374

>NTDB_id=314063 LL1196_RS00835 WP_021215206.1 153533..154321(+) (codY) [Lactococcus cremoris strain 1196]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLDDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEKMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=314063 LL1196_RS00835 WP_021215206.1 153533..154321(+) (codY) [Lactococcus cremoris strain 1196]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATTTTCCCAGAAGAAAGTCT
TGACGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAAAAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.237

100

0.992
  codY Bacillus subtilis subsp. subtilis str. 168

47.843

97.328

0.466

Multiple sequence alignment