Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HELPY_RS02120 Genome accession   NC_012973
Coordinates   417904..419079 (-) Length   391 a.a.
NCBI ID   WP_000059565.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 412904..424079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS02085 (HELPY_0420) - 413230..413544 (+) 315 WP_001265940.1 hypothetical protein -
  HELPY_RS02090 (HELPY_0421) - 413522..414289 (+) 768 WP_000602417.1 RNA polymerase sigma factor FliA -
  HELPY_RS02095 (HELPY_0422) fliM 414282..415346 (+) 1065 WP_000763596.1 flagellar motor switch protein FliM -
  HELPY_RS02100 (HELPY_0423) fliY 415350..416213 (+) 864 WP_001150702.1 flagellar motor switch protein FliY -
  HELPY_RS02105 (HELPY_0424) - 416242..416778 (+) 537 WP_000963964.1 YhcH/YjgK/YiaL family protein -
  HELPY_RS02110 (HELPY_0425) - 416775..417272 (+) 498 WP_000780289.1 DUF2147 domain-containing protein -
  HELPY_RS02115 (HELPY_0426) fur 417292..417744 (-) 453 WP_001253274.1 ferric iron uptake transcriptional regulator -
  HELPY_RS02120 (HELPY_0427) rarA 417904..419079 (-) 1176 WP_000059565.1 replication-associated recombination protein A Machinery gene
  HELPY_RS02125 (HELPY_0428) - 419076..419447 (-) 372 WP_000332997.1 heat shock protein transcriptional repressor HspR -
  HELPY_RS02130 (HELPY_0429) - 419457..420323 (-) 867 WP_000045902.1 DnaJ family protein -
  HELPY_RS02135 (HELPY_0430) - 420491..421741 (+) 1251 WP_001199581.1 hypothetical protein -
  HELPY_RS02140 (HELPY_0431) - 421859..422695 (-) 837 WP_000556217.1 5'-3' exonuclease -
  HELPY_RS02145 (HELPY_0433) - 422950..423846 (-) 897 WP_000697541.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43773.52 Da        Isoelectric Point: 8.2205

>NTDB_id=31406 HELPY_RS02120 WP_000059565.1 417904..419079(-) (rarA) [Helicobacter pylori B38]
MSLTALLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTHLKKSDLDKLCAK
ALALLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=31406 HELPY_RS02120 WP_000059565.1 417904..419079(-) (rarA) [Helicobacter pylori B38]
ATGAGCCTGACTGCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTCTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCACCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAATCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCCTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.408

100

0.384

Multiple sequence alignment