Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   D2M30_RS13735 Genome accession   NZ_CP032146
Coordinates   2705514..2707871 (-) Length   785 a.a.
NCBI ID   WP_125123028.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2700514..2712871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS13715 (D2M30_13730) - 2700595..2702148 (+) 1554 WP_014470771.1 SH3 domain-containing protein -
  D2M30_RS13720 (D2M30_13735) dtd 2702177..2702620 (-) 444 WP_013353029.1 D-aminoacyl-tRNA deacylase -
  D2M30_RS13725 (D2M30_13740) relA 2702633..2704837 (-) 2205 WP_065522681.1 GTP diphosphokinase -
  D2M30_RS13730 (D2M30_13745) - 2704996..2705508 (-) 513 WP_013353031.1 adenine phosphoribosyltransferase -
  D2M30_RS13735 (D2M30_13750) recJ 2705514..2707871 (-) 2358 WP_125123028.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  D2M30_RS13740 (D2M30_13755) - 2707927..2708253 (-) 327 WP_125123029.1 lipopolysaccharide assembly LapA domain-containing protein -
  D2M30_RS13745 (D2M30_13760) - 2708317..2708814 (-) 498 WP_125123030.1 cation:proton antiporter regulatory subunit -
  D2M30_RS13750 (D2M30_13765) secDF 2708945..2711164 (-) 2220 WP_013353035.1 protein translocase subunit SecDF -
  D2M30_RS13755 (D2M30_13770) - 2711201..2711497 (-) 297 WP_013353036.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87295.76 Da        Isoelectric Point: 4.9545

>NTDB_id=314038 D2M30_RS13735 WP_125123028.1 2705514..2707871(-) (recJ) [Bacillus amyloliquefaciens strain YP6]
MLASKMRWEIQQPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFYDPYELKGMREAVDRIKLAVSRG
EPIMIYGDYDADGVTSTSVMLTALKQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTDDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQGGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDSAVLDCVGFNKGELEAGIVPGSTISIVGEMSINEWNNRKKPQLMIKDA
AVPEWQLFDIRGKRMWEDTVTALPKEKRVLISFNEKTAQKLRAELSGELAEITSESEAEALPLDGKYAVFLDVPPSADRL
QRLLDGKKPERIYFVFINHEEHFLSSFPSRNDFKWFYAFLLKRGTFDLGRHGSELARHRGWSIDTINFMTKVFFDLGFVK
IEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=314038 D2M30_RS13735 WP_125123028.1 2705514..2707871(-) (recJ) [Bacillus amyloliquefaciens strain YP6]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATAAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGTGCAAGGCTGTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAGGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCCCGCGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCGGTGATGCTGACGGCGCTCAAACAGCT
GTCAGCGAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGATTTTCGCTCATCATTACAGTGGATACGGGTATCGCCGCCGTTCATGAAGCTGAAGTCGCAAAAGAGCTC
GGTTTGGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGACGTATTTGCGATTATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTGGCGGCGATCGGTACGGTTGCTGATCTGGTGCCGCTGCATGATGAAAACAGATTAATA
GCGTCGCTCGGGATCGAAAGGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGAGATAT
CGGACAAGCTGATGAGGAAACGATCGGGTTTCAGGTCGCACCGAGGCTGAATGCCGTCGGAAGAATAGAGCAGGCTGATC
CCGCCGTGCACCTGTTGATGACCGATGACCAGTTTGAAGCGGAGGAGCTGGCTTCGGATATTGACCGGCTGAATAAAGAG
CGGCAGAAAATGGTGAAAACGATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGGCGGAAACCCTTCTGCCATTGT
CGTGGCAAAAGCCGGCTGGAATCCGGGAGTTGTCGGTATTGTCGCATCGAAGCTGGCTGAACGCTTTTACCGGCCCGCTG
TCGTGCTGGGGATTGATGAGGAGCAGGGAATCGCCAAAGGGTCGGCGCGAAGCATCAGAGGCTTCAACCTTTTTACGAGC
CTGTCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGGCACCCGATGGCCGCAGGAATGACTTTGAAGGCTGAAGATGT
GGCGGATTTAAGGGACCGGCTGAATCAAATGGCTGAAGAAACCCTTACCGAAGAGGATTTTATCCCCGTTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATCACCGTTGAAAGCATTACAGAATTGAATATGCTGTCGCCGTTCGGCATGCTTAAC
CCTAAACCTCATGTGATGGTGGAAAACGCCGTGCTTGATGAAGTGCGCCTGATCGGAGCAAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATTCCGCCGTTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTTGAAGCCGGGATTGTTCCCGGAT
CAACGATTTCCATTGTCGGCGAGATGTCTATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGATGCT
GCGGTGCCGGAATGGCAGCTTTTTGATATCAGGGGCAAGCGGATGTGGGAGGACACGGTCACTGCGCTGCCTAAGGAAAA
ACGGGTGCTCATCAGCTTTAACGAAAAAACCGCCCAAAAGCTCCGTGCCGAGCTTTCGGGTGAGCTGGCTGAGATCACGT
CGGAATCCGAAGCAGAAGCTCTTCCGCTTGACGGAAAGTATGCCGTTTTTCTGGATGTGCCGCCGTCAGCGGACCGCCTC
CAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATTAATCATGAAGAACATTTCCTGTCCTCATT
TCCATCGCGGAATGACTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCACTTTTGACTTAGGCAGGCATGGTTCAG
AGCTTGCAAGACACAGAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAA
ATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTATCAGGTAAAACA
GCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCAGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGAACC
AAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-768)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.934

100

0.82

Multiple sequence alignment