Detailed information NTG0314037

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: D2M30_RS13660
• Genome accession: NZ_CP032146
• Coordinates: 2688346..2690724 (-)
• Length: 792 a.a.
• NCBI ID: WP_065522689.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain YP6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2683346..2695724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2M30_RS13625 (D2M30_13640)	-	2684427..2685155 (+)	729	WP_013353013.1	amino acid ABC transporter ATP-binding protein	-
D2M30_RS13630 (D2M30_13645)	-	2685176..2686003 (+)	828	WP_013353014.1	transporter substrate-binding domain-containing protein	-
D2M30_RS13635 (D2M30_13650)	-	2686061..2686711 (+)	651	WP_125123024.1	amino acid ABC transporter permease	-
D2M30_RS13640 (D2M30_13655)	-	2686730..2687386 (+)	657	WP_065522692.1	amino acid ABC transporter permease	-
D2M30_RS13645 (D2M30_13660)	-	2687420..2687551 (-)	132	WP_003152741.1	YrzQ family protein	-
D2M30_RS13650 (D2M30_13665)	-	2687573..2687764 (-)	192	WP_003152738.1	hypothetical protein	-
D2M30_RS13655 (D2M30_13670)	-	2687777..2688235 (-)	459	WP_014470766.1	hypothetical protein	-
D2M30_RS13660 (D2M30_13675)	recD2	2688346..2690724 (-)	2379	WP_065522689.1	ATP-dependent RecD-like DNA helicase	Machinery gene
D2M30_RS13665 (D2M30_13680)	-	2690743..2691363 (-)	621	WP_125123637.1	lipopolysaccharide assembly protein LapB	-
D2M30_RS13670 (D2M30_13685)	mnmA	2691451..2692566 (-)	1116	WP_045510333.1	tRNA 2-thiouridine(34) synthase MnmA	-
D2M30_RS13675 (D2M30_13690)	-	2692603..2693742 (-)	1140	WP_125123025.1	cysteine desulfurase family protein	-
D2M30_RS13680 (D2M30_13695)	cymR	2693761..2694177 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
D2M30_RS13685 (D2M30_13700)	-	2694372..2695640 (+)	1269	WP_045510330.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88318.10 Da
• Isoelectric Point: 5.0271

>NTDB_id=314037 D2M30_RS13660 WP_065522689.1 2688346..2690724(-) (recD2) [Bacillus amyloliquefaciens strain YP6]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=314037 D2M30_RS13660 WP_065522689.1 2688346..2690724(-) (recD2) [Bacillus amyloliquefaciens strain YP6]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTCATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACGCATCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTCGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCAAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATACGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAAAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAGGCCGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGGAACCATCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACGTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTACTGAATCAGTCAGCTGACGGAGGCCGCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGACATCGTCATAGAAGGAGAACGCTGCTATT
TTCCATCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGTCAAAAGGA
TGCCATTCAAAAAGCGCTGTCGTCGCCGATGCTTTTACTGACCGGAGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCTGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATCCAGCTCATCGTCGTGGGTGAT
GAAGACCAGCTTCCTTCCGTAGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGTCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGTAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCACAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTTGTCAAAGGCTACTATCGAATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATCCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCACTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886