Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D2M30_RS08220 Genome accession   NZ_CP032146
Coordinates   1615385..1616164 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610385..1621164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS08200 (D2M30_08215) trmFO 1611072..1612379 (+) 1308 WP_125122602.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D2M30_RS08205 (D2M30_08220) xerC 1612449..1613366 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  D2M30_RS08210 (D2M30_08225) hslV 1613382..1613927 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  D2M30_RS08215 (D2M30_08230) hslU 1613944..1615347 (+) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  D2M30_RS08220 (D2M30_08235) codY 1615385..1616164 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D2M30_RS08225 (D2M30_08240) flgB 1616519..1616908 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  D2M30_RS08230 (D2M30_08245) flgC 1616908..1617360 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  D2M30_RS08235 (D2M30_08250) fliE 1617371..1617691 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  D2M30_RS08240 (D2M30_08255) fliF 1617734..1619344 (+) 1611 WP_125122603.1 flagellar basal-body MS-ring/collar protein FliF -
  D2M30_RS08245 (D2M30_08260) fliG 1619357..1620373 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  D2M30_RS08250 (D2M30_08265) fliH 1620366..1621121 (+) 756 WP_125122604.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=314018 D2M30_RS08220 WP_013352252.1 1615385..1616164(+) (codY) [Bacillus amyloliquefaciens strain YP6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=314018 D2M30_RS08220 WP_013352252.1 1615385..1616164(+) (codY) [Bacillus amyloliquefaciens strain YP6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ACCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATCCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment