Detailed information NTG0313839

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CDG60_RS16510
• Genome accession: NZ_CP032134
• Coordinates: 3258877..3259314 (-)
• Length: 145 a.a.
• NCBI ID: WP_087512167.1
• Uniprot ID: A0A3B7M2G0
• Organism: Acinetobacter chinensis strain WCHAc010005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3253877..3264314

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG60_RS16490 (CDG60_16490)	-	3255718..3256536 (-)	819	WP_087512170.1	PilX N-terminal domain-containing pilus assembly protein	-
CDG60_RS16495 (CDG60_16495)	-	3256533..3257570 (-)	1038	WP_087512169.1	PilW family protein	-
CDG60_RS16500 (CDG60_16500)	pilV	3257570..3258073 (-)	504	WP_227542896.1	type IV pilus modification protein PilV	-
CDG60_RS16505 (CDG60_16505)	-	3258073..3258564 (-)	492	WP_227542897.1	GspH/FimT family pseudopilin	-
CDG60_RS16510 (CDG60_16510)	comF	3258877..3259314 (-)	438	WP_087512167.1	type IV pilin protein	Machinery gene
CDG60_RS16515 (CDG60_16515)	-	3259315..3259875 (-)	561	WP_087512205.1	type IV pilin protein	-
CDG60_RS16520 (CDG60_16520)	-	3259886..3264007 (-)	4122	WP_087512166.1	pilus assembly protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16049.30 Da
• Isoelectric Point: 8.8763

>NTDB_id=313839 CDG60_RS16510 WP_087512167.1 3258877..3259314(-) (comF) [Acinetobacter chinensis strain WCHAc010005]
MHQKIKGFTLIEMMVVIAIIGILAAIAYPTYNNYKVRTNRADLQNELSLIAQKLQAYHLVHNSYKNADLSVAGYTAPAKY
PKQDMAHYSLALTVDSDFKGWTLEATPVSSIQNGDGKVCLNDQGYKSWKKGQVSCSLSSTSGWDN

Nucleotide

• Length: 438 bp

>NTDB_id=313839 CDG60_RS16510 WP_087512167.1 3258877..3259314(-) (comF) [Acinetobacter chinensis strain WCHAc010005]
ATGCATCAGAAAATCAAAGGATTTACCTTAATTGAAATGATGGTGGTGATTGCAATCATCGGTATTCTTGCCGCGATTGC
ATATCCGACATACAACAACTACAAAGTCCGAACCAACCGAGCGGATTTACAGAATGAATTAAGCCTGATTGCACAGAAAT
TGCAGGCTTATCACCTTGTTCATAACAGCTATAAAAATGCAGATCTTTCAGTGGCAGGTTATACCGCACCGGCAAAATAT
CCGAAGCAGGATATGGCGCATTATTCATTGGCACTGACAGTGGATTCAGATTTTAAAGGGTGGACACTGGAGGCAACACC
GGTATCGTCTATCCAGAATGGAGATGGAAAAGTCTGTCTGAATGATCAGGGCTATAAATCCTGGAAAAAAGGGCAGGTCA
GCTGTTCACTCAGCAGTACATCTGGATGGGATAACTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (4-28)

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (29-119)

3D structure

• AlphaFold DB: A0A3B7M2G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	56.115	95.862	0.538
pilE	Acinetobacter baumannii D1279779	44.928	95.172	0.428