Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Ahae2126ch_RS01540 Genome accession   NZ_CP031991
Coordinates   331287..331931 (+) Length   214 a.a.
NCBI ID   WP_004641325.1    Uniprot ID   N9GL44
Organism   Acinetobacter haemolyticus strain 2126ch     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326287..336931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae2126ch_RS01525 (Ahae2126ch_01545) - 326627..327445 (+) 819 WP_125502219.1 putative RNA methyltransferase -
  Ahae2126ch_RS01530 (Ahae2126ch_01550) ponA 327474..330065 (-) 2592 WP_026070395.1 penicillin-binding protein PBP1a -
  Ahae2126ch_RS01535 (Ahae2126ch_01555) comM 330229..331287 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  Ahae2126ch_RS01540 (Ahae2126ch_01560) pilN 331287..331931 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  Ahae2126ch_RS01545 (Ahae2126ch_01565) pilO 331928..332638 (+) 711 WP_008941136.1 type 4a pilus biogenesis protein PilO Machinery gene
  Ahae2126ch_RS01550 (Ahae2126ch_01570) pilP 332638..333165 (+) 528 WP_005088514.1 pilus assembly protein PilP Machinery gene
  Ahae2126ch_RS01555 (Ahae2126ch_01575) pilQ 333227..335359 (+) 2133 WP_171479087.1 type IV pilus secretin PilQ family protein Machinery gene
  Ahae2126ch_RS01560 (Ahae2126ch_01580) aroK 335398..335940 (+) 543 WP_005087029.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23956.37 Da        Isoelectric Point: 6.0102

>NTDB_id=313196 Ahae2126ch_RS01540 WP_004641325.1 331287..331931(+) (pilN) [Acinetobacter haemolyticus strain 2126ch]
MAKINLLPWRDELREQRKKQFIAFCVGVAALGIASVFTAWMYFDHKLNDQEQANQFIVSTNQNLDVQLKSLEGLQERRNA
IIERMKLIQGLQGQRPVIVRLVDELVRVTPPTMYITKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
SEEKKDKAVSSLVPRVEENYGSFVVTVDLGEIGTTVTTDPASESAASVTVGGAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=313196 Ahae2126ch_RS01540 WP_004641325.1 331287..331931(+) (pilN) [Acinetobacter haemolyticus strain 2126ch]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAGAAAGAAACAATTTATTGCATTTTGTGTTGG
GGTGGCTGCTTTAGGAATCGCATCTGTATTTACAGCATGGATGTATTTTGATCACAAGCTGAATGATCAAGAACAAGCAA
ACCAGTTTATTGTGAGTACCAATCAAAACTTAGATGTTCAACTGAAGTCATTAGAGGGATTGCAAGAGCGTCGCAATGCG
ATTATTGAACGCATGAAGTTGATTCAAGGACTGCAAGGACAACGACCAGTCATTGTACGTTTGGTTGATGAGTTGGTGCG
TGTAACCCCTCCAACAATGTACATCACTAAGTTTACGCGTACAGGTGATAAATTTACCATCGAAGGAAAAGCAGAGAGTC
CAAATACCGTTGCCGAGCTGTTACGAAATTTGGAAGCTTCACCTTGGTATCGTAACGCATTTATGAATTCGTTTTTGGCA
TCAGAAGAGAAAAAAGATAAAGCCGTTAGCTCTTTAGTTCCTCGTGTCGAAGAAAATTATGGCAGTTTCGTTGTTACTGT
AGACTTGGGTGAAATTGGAACCACGGTGACAACTGATCCTGCTTCAGAATCAGCTGCATCAGTAACAGTGGGAGGCGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9GL44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

78.972

100

0.79
  comN Acinetobacter baylyi ADP1

71.905

98.131

0.706

Multiple sequence alignment