Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D0819_RS03975 Genome accession   NZ_CP031784
Coordinates   738036..738815 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain HMNig-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 733036..743815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS03955 (D0819_03965) trmFO 733729..735036 (+) 1308 WP_153256751.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D0819_RS03960 (D0819_03970) xerC 735104..736018 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  D0819_RS03965 (D0819_03975) clpQ 736031..736576 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  D0819_RS03970 (D0819_03980) hslU 736584..737996 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  D0819_RS03975 (D0819_03985) codY 738036..738815 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D0819_RS03980 (D0819_03990) flgB 739194..739583 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  D0819_RS03985 (D0819_03995) flgC 739583..740035 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  D0819_RS03990 (D0819_04000) fliE 740046..740366 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  D0819_RS03995 (D0819_04005) fliF 740412..742022 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  D0819_RS04000 (D0819_04010) fliG 742035..743051 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  D0819_RS04005 (D0819_04015) fliH 743044..743796 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=311363 D0819_RS03975 WP_003220850.1 738036..738815(+) (codY) [Bacillus subtilis strain HMNig-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=311363 D0819_RS03975 WP_003220850.1 738036..738815(+) (codY) [Bacillus subtilis strain HMNig-2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCAGAGACGCTGCGAGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment