Detailed information NTG0311305

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D0808_RS11275
• Genome accession: NZ_CP031783
• Coordinates: 2175964..2176743 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain MENO2 voucher National Research Centre
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2170964..2181743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0808_RS11255 (D0808_11345)	trmFO	2171657..2172964 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D0808_RS11260 (D0808_11350)	xerC	2173032..2173946 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
D0808_RS11265 (D0808_11355)	clpQ	2173959..2174504 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
D0808_RS11270 (D0808_11360)	hslU	2174521..2175924 (+)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
D0808_RS11275 (D0808_11365)	codY	2175964..2176743 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D0808_RS11280 (D0808_11370)	flgB	2177123..2177512 (+)	390	WP_153256034.1	flagellar basal body rod protein FlgB	-
D0808_RS11285 (D0808_11375)	flgC	2177512..2177964 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
D0808_RS11290 (D0808_11380)	fliE	2177975..2178295 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
D0808_RS11295 (D0808_11385)	fliF	2178341..2179951 (+)	1611	WP_153256035.1	flagellar basal-body MS-ring/collar protein FliF	-
D0808_RS11300 (D0808_11390)	fliG	2179964..2180980 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
D0808_RS11305 (D0808_11395)	fliH	2180973..2181725 (+)	753	WP_172843761.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=311305 D0808_RS11275 WP_003220850.1 2175964..2176743(+) (codY) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=311305 D0808_RS11275 WP_003220850.1 2175964..2176743(+) (codY) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGAAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467