Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D0853_RS15615 Genome accession   NZ_CP031781
Coordinates   3110900..3111625 (+) Length   241 a.a.
NCBI ID   WP_029559173.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VPD14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3105900..3116625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0853_RS15600 (D0853_15630) - 3107003..3109324 (+) 2322 WP_005478620.1 Tex family protein -
  D0853_RS15605 (D0853_15635) - 3109460..3109924 (-) 465 WP_005459035.1 hypothetical protein -
  D0853_RS15610 (D0853_15640) bioH 3110048..3110815 (-) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  D0853_RS15615 (D0853_15645) comF 3110900..3111625 (+) 726 WP_029559173.1 amidophosphoribosyltransferase Machinery gene
  D0853_RS15620 (D0853_15650) nfuA 3111723..3112307 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  D0853_RS15625 (D0853_15655) nudE 3112528..3113097 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  D0853_RS15630 (D0853_15660) cysQ 3113139..3113966 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  D0853_RS15635 (D0853_15665) - 3114252..3115013 (-) 762 WP_005459010.1 type II secretion system protein N -
  D0853_RS15640 (D0853_15670) - 3115015..3115506 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27712.87 Da        Isoelectric Point: 9.1620

>NTDB_id=311255 D0853_RS15615 WP_029559173.1 3110900..3111625(+) (comF) [Vibrio parahaemolyticus strain VPD14]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSGILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=311255 D0853_RS15615 WP_029559173.1 3110900..3111625(+) (comF) [Vibrio parahaemolyticus strain VPD14]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTATCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGGCATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.739

98.755

0.481

Multiple sequence alignment