Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SSUBM407_RS02415 Genome accession   NC_012926
Coordinates   487134..487868 (+) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis BM407     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 482134..492868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUBM407_RS02390 (SSUBM407_0429) - 482634..482942 (-) 309 WP_002938710.1 DUF1827 family protein -
  SSUBM407_RS02395 (SSUBM407_0430) - 482997..483458 (-) 462 WP_002938708.1 NUDIX hydrolase -
  SSUBM407_RS02400 (SSUBM407_0431) clpE 483644..485872 (-) 2229 WP_012775506.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SSUBM407_RS02405 (SSUBM407_0432) - 486096..486326 (+) 231 WP_002938704.1 DUF1797 family protein -
  SSUBM407_RS02410 (SSUBM407_0433) - 486452..487141 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  SSUBM407_RS02415 (SSUBM407_0434) amiE 487134..487868 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  SSUBM407_RS02420 (SSUBM407_0435) - 487998..488846 (+) 849 WP_011922050.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  SSUBM407_RS02425 (SSUBM407_0436) - 490295..490588 (+) 294 WP_002938694.1 hypothetical protein -
  SSUBM407_RS02430 (SSUBM407_0437) lepB 490578..491180 (+) 603 WP_014917214.1 signal peptidase I -
  SSUBM407_RS02435 (SSUBM407_0438) - 491199..491585 (+) 387 WP_011922052.1 hypothetical protein -
  SSUBM407_RS02440 (SSUBM407_0439) - 491586..491975 (-) 390 Protein_431 transposase -
  SSUBM407_RS02445 (SSUBM407_0440) - 491943..492770 (+) 828 WP_012775508.1 class C sortase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=31087 SSUBM407_RS02415 WP_002943067.1 487134..487868(+) (amiE) [Streptococcus suis BM407]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=31087 SSUBM407_RS02415 WP_002943067.1 487134..487868(+) (amiE) [Streptococcus suis BM407]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAACATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGTCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment