Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SaO408_RS06355 Genome accession   NZ_CP038270
Coordinates   1258086..1258859 (+) Length   257 a.a.
NCBI ID   WP_000055339.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253086..1263859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS06335 (SaO408_1183) trmFO 1253430..1254737 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SaO408_RS06340 (SaO408_1184) xerC 1255154..1256050 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  SaO408_RS06345 (SaO408_1185) hslV 1256047..1256592 (+) 546 WP_000072682.1 ATP-dependent protease subunit HslV -
  SaO408_RS06350 (SaO408_1186) hslU 1256658..1258061 (+) 1404 WP_000379061.1 ATP-dependent protease ATPase subunit HslU -
  SaO408_RS06355 (SaO408_1187) codY 1258086..1258859 (+) 774 WP_000055339.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SaO408_RS06360 - 1258910..1259002 (+) 93 WP_031788481.1 hypothetical protein -
  SaO408_RS06365 (SaO408_1188) rpsB 1259201..1259968 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SaO408_RS06370 - 1260002..1260115 (+) 114 WP_001789890.1 hypothetical protein -
  SaO408_RS06375 (SaO408_1189) tsf 1260150..1261031 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SaO408_RS06380 (SaO408_1190) pyrH 1261168..1261890 (+) 723 WP_000057330.1 UMP kinase -
  SaO408_RS06385 (SaO408_1191) frr 1261909..1262463 (+) 555 WP_001280006.1 ribosome recycling factor -
  SaO408_RS06390 (SaO408_1192) - 1262836..1263606 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28783.14 Da        Isoelectric Point: 6.0680

>NTDB_id=310776 SaO408_RS06355 WP_000055339.1 1258086..1258859(+) (codY) [Staphylococcus aureus strain O408 isolate B115]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIRVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=310776 SaO408_RS06355 WP_000055339.1 1258086..1258859(+) (codY) [Staphylococcus aureus strain O408 isolate B115]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGTGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAGAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424