Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D0Y52_RS00135 Genome accession   NZ_CP031703
Coordinates   31014..32849 (-) Length   611 a.a.
NCBI ID   WP_004218471.1    Uniprot ID   -
Organism   Bifidobacterium animalis subsp. lactis strain IDCC4301     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 26014..37849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y52_RS00115 (D0Y52_00115) - 27189..27608 (-) 420 WP_004218476.1 hypothetical protein -
  D0Y52_RS00120 (D0Y52_00120) - 27699..28334 (-) 636 WP_004218474.1 sugar O-acetyltransferase -
  D0Y52_RS00125 (D0Y52_00125) - 28410..29099 (+) 690 WP_004218473.1 phosphatase PAP2 family protein -
  D0Y52_RS00130 (D0Y52_00130) - 29474..31000 (+) 1527 WP_004218472.1 polysaccharide deacetylase family protein -
  D0Y52_RS00135 (D0Y52_00135) rcrQ 31014..32849 (-) 1836 WP_004218471.1 ABC transporter ATP-binding protein Regulator
  D0Y52_RS00140 (D0Y52_00140) rcrP 32921..34840 (-) 1920 WP_004218470.1 ABC transporter ATP-binding protein Regulator
  D0Y52_RS00145 (D0Y52_00145) - 34912..35505 (-) 594 WP_004218469.1 MarR family winged helix-turn-helix transcriptional regulator -
  D0Y52_RS08410 - 35809..36622 (+) 814 Protein_27 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67143.41 Da        Isoelectric Point: 5.1526

>NTDB_id=310612 D0Y52_RS00135 WP_004218471.1 31014..32849(-) (rcrQ) [Bifidobacterium animalis subsp. lactis strain IDCC4301]
MGHGRAGAPVEKADDFGGALKELMRFSKRYIPAIVIALILGVGGAICQIIGPDYLGDMTDEITKGLPALVHGKPVLRSID
MTAVTRIGWTLVALYVGYALLSYVQSWMMATVTQRTAQRLRAAIDVKMNKLPLKYFDEHSTGDVMSRITNDVDAVGQTLG
QSLGTLISSVTLFVGSLVMMFANNWILALCAVGATLLGMVLMLVVMRFSQKYFVKQQMALGDVNGHVEEMYSGHTVVKAF
GGEADAIRRFERYNNDLYDSGWKSQFISGLMMPMMNLVGNLGYVVVCVVGAALAMNGSIEFGVIVAFMLYIRLFTQPLSQ
FAQAFQNLQRCAAGSERVFTFLDEPELADESDKQPLLGYGSNGEITPVEGRVSFEHVKFGYEPNKLVIHDFSADVEPGQK
VAIVGPTGAGKTTMVNLLMRFYEIAGGKISIDGIDTKSVPRWNVHDQFSMVLQDTWVFNGTVRENVAYAKEDVTDEQVVA
ACRAVGLDRYIRSLPNGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQTAMDKLTEGRTSF
VIAHRLSTIRDADMILVMRDGDIVERGTHEELLAKHGFYADIYNAQFTLAQ

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=310612 D0Y52_RS00135 WP_004218471.1 31014..32849(-) (rcrQ) [Bifidobacterium animalis subsp. lactis strain IDCC4301]
ATGGGACATGGGCGTGCAGGCGCGCCCGTGGAGAAAGCCGATGATTTCGGCGGCGCGCTCAAGGAACTGATGCGCTTCAG
CAAGCGCTACATACCGGCGATCGTCATCGCGCTGATCCTCGGCGTCGGCGGCGCGATCTGCCAGATCATAGGGCCGGACT
ACCTCGGCGATATGACCGACGAAATCACCAAGGGACTGCCTGCGCTCGTGCACGGCAAGCCGGTGCTGCGTTCGATCGAC
ATGACCGCGGTGACGCGCATCGGATGGACGCTCGTGGCGCTCTACGTGGGCTACGCACTGCTCTCATACGTGCAGAGCTG
GATGATGGCCACCGTCACGCAGCGCACGGCGCAACGCCTGCGCGCGGCCATCGACGTGAAGATGAACAAGCTGCCGCTCA
AATACTTCGACGAGCACAGCACCGGCGACGTGATGAGCCGCATCACGAACGACGTGGACGCGGTGGGCCAGACGCTCGGG
CAGTCCCTCGGCACGCTCATCTCGTCGGTCACGCTGTTCGTGGGCTCGCTCGTCATGATGTTCGCGAACAACTGGATCCT
GGCATTGTGCGCAGTGGGCGCGACCCTGCTCGGCATGGTGCTCATGCTCGTCGTGATGAGGTTCTCGCAGAAGTACTTCG
TCAAGCAGCAGATGGCGCTCGGCGACGTGAACGGCCATGTGGAGGAGATGTACAGCGGGCACACCGTGGTCAAGGCCTTC
GGCGGCGAGGCCGATGCGATCCGCAGATTCGAACGCTACAACAACGACCTGTACGACTCGGGATGGAAGAGCCAGTTCAT
CTCGGGCCTCATGATGCCAATGATGAACCTCGTGGGCAACCTCGGCTACGTCGTCGTGTGCGTGGTCGGCGCGGCGCTCG
CGATGAACGGCTCGATCGAATTCGGCGTGATCGTGGCGTTCATGCTCTACATTCGCCTGTTCACGCAACCGCTCTCGCAG
TTCGCGCAGGCGTTCCAGAATCTGCAACGCTGCGCCGCGGGCTCCGAACGGGTGTTCACCTTCCTCGACGAACCCGAGCT
CGCCGACGAGTCCGACAAGCAGCCATTGCTCGGCTACGGCAGCAACGGCGAGATCACGCCCGTCGAAGGCCGCGTGAGCT
TCGAGCACGTGAAATTCGGGTACGAGCCGAACAAGCTCGTCATCCACGATTTCTCGGCGGACGTGGAGCCTGGGCAGAAA
GTGGCGATCGTGGGGCCCACCGGCGCGGGCAAGACGACGATGGTGAATCTGCTCATGCGATTCTACGAGATCGCCGGCGG
GAAGATCTCGATCGACGGCATCGACACGAAGAGCGTGCCGCGTTGGAACGTGCACGACCAGTTCTCGATGGTGCTGCAGG
ACACCTGGGTGTTCAACGGCACCGTGCGCGAGAACGTGGCGTATGCGAAGGAAGACGTGACCGACGAGCAGGTGGTCGCC
GCCTGCCGTGCCGTGGGACTCGACCGTTACATCCGCTCGCTGCCAAACGGCTACGACACCGTGCTCGACGAGTCGGCCAC
GTTGTCGCAGGGGCAGAAGCAGCTGCTGACGATCGCGCGCGCCATGGTGCAGGATTCGCCGATCCTCATTCTCGACGAGG
CGACGAGCTCGGTCGATACGCGCACCGAGGAGCTCATCCAGACGGCGATGGACAAGCTCACCGAAGGGCGCACGTCGTTC
GTCATCGCACACCGGCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGCGCGACGGCGACATCGTCGAGCGTGG
CACACACGAGGAACTGCTCGCGAAGCACGGTTTCTACGCCGACATCTACAACGCGCAGTTCACACTCGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-318)

ABC transporter (ABC_tran)

(389-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.669

96.399

0.527

Multiple sequence alignment