Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DXY21_RS16620 Genome accession   NZ_CP031694
Coordinates   3342360..3343139 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM101368     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3337360..3348139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS16590 (DXY21_03328) fliH 3337404..3338159 (-) 756 WP_060386938.1 flagellar assembly protein FliH -
  DXY21_RS16595 (DXY21_03329) fliG 3338152..3339168 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DXY21_RS16600 (DXY21_03330) fliF 3339181..3340791 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  DXY21_RS16605 (DXY21_03331) fliE 3340834..3341154 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  DXY21_RS16610 (DXY21_03332) flgC 3341165..3341617 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  DXY21_RS16615 (DXY21_03333) flgB 3341617..3342006 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  DXY21_RS16620 (DXY21_03334) codY 3342360..3343139 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DXY21_RS16625 (DXY21_03335) hslU 3343177..3344580 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  DXY21_RS16630 (DXY21_03336) hslV 3344597..3345142 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DXY21_RS16635 (DXY21_03337) xerC 3345158..3346075 (-) 918 WP_043867088.1 tyrosine recombinase XerC -
  DXY21_RS16640 (DXY21_03338) trmFO 3346145..3347452 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=310422 DXY21_RS16620 WP_003154263.1 3342360..3343139(-) (codY) [Bacillus velezensis strain SRCM101368]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=310422 DXY21_RS16620 WP_003154263.1 3342360..3343139(-) (codY) [Bacillus velezensis strain SRCM101368]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment