Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ES298_RS06980 Genome accession   NZ_CP038253
Coordinates   1396332..1397054 (-) Length   240 a.a.
NCBI ID   WP_001010369.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901929     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391332..1402054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES298_RS06970 (ES298_07365) - 1393906..1395072 (-) 1167 WP_000521373.1 MalY/PatB family protein -
  ES298_RS06975 (ES298_07370) - 1395080..1396174 (-) 1095 WP_000031958.1 cystathionine gamma-synthase -
  ES298_RS06980 rcrP 1396332..1397054 (-) 723 WP_001010369.1 ABC transporter ATP-binding protein Regulator
  ES298_RS06985 - 1397079..1398014 (-) 936 WP_000768992.1 ABC transporter ATP-binding protein -
  ES298_RS06990 (ES298_07380) amiA 1398186..1400144 (-) 1959 WP_000748887.1 peptide ABC transporter substrate-binding protein Regulator
  ES298_RS06995 (ES298_07390) - 1400348..1401970 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27335.22 Da        Isoelectric Point: 5.2027

>NTDB_id=310357 ES298_RS06980 WP_001010369.1 1396332..1397054(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901929]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDAYSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=310357 ES298_RS06980 WP_001010369.1 1396332..1397054(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901929]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGTATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363