Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   CH576_RS00260 Genome accession   NZ_CP031691
Coordinates   55065..55352 (-) Length   95 a.a.
NCBI ID   WP_012055313.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P615-8618     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50065..60352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH576_RS00250 (CH576_00250) nrdR 51135..51584 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH576_RS00255 (CH576_00255) recC 51639..55019 (-) 3381 WP_105894717.1 exodeoxyribonuclease V subunit gamma -
  CH576_RS00260 (CH576_00260) comQ 55065..55352 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  CH576_RS00265 (CH576_00265) comP 55345..56028 (-) 684 WP_105894718.1 DUF2572 family protein Machinery gene
  CH576_RS00270 (CH576_00270) comO 56043..56759 (-) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  CH576_RS00275 (CH576_00275) comN 56759..57271 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  CH576_RS00280 (CH576_00280) suhB 57471..58274 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  CH576_RS00285 (CH576_00285) nrfE 58383..60290 (+) 1908 WP_105894719.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11021.82 Da        Isoelectric Point: 9.2205

>NTDB_id=310215 CH576_RS00260 WP_012055313.1 55065..55352(-) (comQ) [Haemophilus influenzae strain P615-8618]
MNKGMSFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=310215 CH576_RS00260 WP_012055313.1 55065..55352(-) (comQ) [Haemophilus influenzae strain P615-8618]
ATGAATAAAGGAATGTCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCCCAAC
GTCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

97.895

100

0.979

Multiple sequence alignment