Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   CH578_RS00280 Genome accession   NZ_CP031690
Coordinates   56730..57242 (-) Length   170 a.a.
NCBI ID   WP_011272299.1    Uniprot ID   Q4QLX0
Organism   Haemophilus influenzae strain P617-9224     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51730..62242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH578_RS00265 (CH578_00265) comQ 55051..55338 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  CH578_RS00270 (CH578_00270) comP 55331..56014 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  CH578_RS00275 (CH578_00275) comO 56011..56730 (-) 720 WP_011272300.1 PulJ/GspJ family protein Machinery gene
  CH578_RS00280 (CH578_00280) comN 56730..57242 (-) 513 WP_011272299.1 pilus assembly FimT family protein Machinery gene
  CH578_RS00285 (CH578_00285) suhB 57442..58254 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  CH578_RS00290 (CH578_00290) nrfE 58363..60270 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -
  CH578_RS00295 (CH578_00295) - 60270..60800 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -
  CH578_RS00300 (CH578_00300) nrfF 60797..61939 (+) 1143 WP_005688390.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19874.13 Da        Isoelectric Point: 8.7271

>NTDB_id=310183 CH578_RS00280 WP_011272299.1 56730..57242(-) (comN) [Haemophilus influenzae strain P617-9224]
MQKGVTLVELLIGLAIISIVLSFVVPLWQTDSPKTILAKEQHRLYLFLRQIQVRAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=310183 CH578_RS00280 WP_011272299.1 56730..57242(-) (comN) [Haemophilus influenzae strain P617-9224]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTGATTGGATTAGCAATCATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCTTGTATTTATTTCTACGACAAATTCAGGTTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCGCATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.882

100

0.959

Multiple sequence alignment