Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CH602_RS00275 Genome accession   NZ_CP031687
Coordinates   56510..57226 (-) Length   238 a.a.
NCBI ID   WP_042593718.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P641-4342     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51510..62226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH602_RS00255 (CH602_00255) nrdR 51617..52066 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH602_RS00260 (CH602_00260) recC 52121..55486 (-) 3366 WP_042593721.1 exodeoxyribonuclease V subunit gamma -
  CH602_RS00265 (CH602_00265) comQ 55532..55819 (-) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  CH602_RS00270 (CH602_00270) comP 55812..56495 (-) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  CH602_RS00275 (CH602_00275) comO 56510..57226 (-) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  CH602_RS00280 (CH602_00280) comN 57226..57738 (-) 513 WP_013526183.1 type II secretion system protein Machinery gene
  CH602_RS00285 (CH602_00285) suhB 57938..58741 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  CH602_RS00290 (CH602_00290) nrfE 58850..60757 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  CH602_RS00295 (CH602_00295) - 60757..61287 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.16 Da        Isoelectric Point: 9.6935

>NTDB_id=310076 CH602_RS00275 WP_042593718.1 56510..57226(-) (comO) [Haemophilus influenzae strain P641-4342]
MMKVLLKGKTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=310076 CH602_RS00275 WP_042593718.1 56510..57226(-) (comO) [Haemophilus influenzae strain P641-4342]
ATGATGAAAGTATTATTAAAAGGGAAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment