Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   CH611_RS00270 Genome accession   NZ_CP031685
Coordinates   55535..55822 (-) Length   95 a.a.
NCBI ID   WP_005648029.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P650-8603     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50535..60822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH611_RS00260 (CH611_00260) nrdR 51599..52048 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH611_RS00265 (CH611_00265) recC 52103..55489 (-) 3387 WP_116945030.1 exodeoxyribonuclease V subunit gamma -
  CH611_RS00270 (CH611_00270) comQ 55535..55822 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  CH611_RS00275 (CH611_00275) comP 55815..56498 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  CH611_RS00280 (CH611_00280) comO 56513..57229 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  CH611_RS00285 (CH611_00285) comN 57229..57741 (-) 513 WP_005648034.1 type II secretion system protein Machinery gene
  CH611_RS00290 (CH611_00290) suhB 57941..58744 (+) 804 WP_032824502.1 inositol-1-monophosphatase -
  CH611_RS00295 (CH611_00295) nrfE 58853..60760 (+) 1908 WP_116945029.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11003.78 Da        Isoelectric Point: 9.2205

>NTDB_id=310004 CH611_RS00270 WP_005648029.1 55535..55822(-) (comQ) [Haemophilus influenzae strain P650-8603]
MNKGISFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=310004 CH611_RS00270 WP_005648029.1 55535..55822(-) (comQ) [Haemophilus influenzae strain P650-8603]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

96.842

100

0.968

Multiple sequence alignment