Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | PGN_RS01305 | Genome accession | NC_010729 |
| Coordinates | 290164..290904 (+) | Length | 246 a.a. |
| NCBI ID | WP_012457382.1 | Uniprot ID | B2RHE4 |
| Organism | Porphyromonas gingivalis ATCC 33277 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 285164..295904
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGN_RS01285 (PGN_0266) | aspS | 285607..287370 (-) | 1764 | WP_012457378.1 | aspartate--tRNA ligase | - |
| PGN_RS12270 | - | 287556..287825 (-) | 270 | WP_143733436.1 | DUF1661 domain-containing protein | - |
| PGN_RS01290 (PGN_0267) | ribD | 287800..288792 (-) | 993 | WP_012457379.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD | - |
| PGN_RS01295 (PGN_0268) | prmC | 288817..289698 (+) | 882 | WP_012457380.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| PGN_RS01300 (PGN_0269) | - | 289695..290180 (+) | 486 | WP_012457381.1 | regulatory protein RecX | - |
| PGN_RS01305 (PGN_0270) | comF | 290164..290904 (+) | 741 | WP_012457382.1 | ComF family protein | Machinery gene |
| PGN_RS01310 (PGN_0271) | - | 291034..293103 (-) | 2070 | WP_012457383.1 | M13 family metallopeptidase | - |
| PGN_RS01315 (PGN_0272) | - | 293122..294024 (-) | 903 | WP_012457384.1 | nucleotidyltransferase family protein | - |
| PGN_RS11455 (PGN_0273) | - | 294206..294346 (-) | 141 | WP_021663364.1 | hypothetical protein | - |
| PGN_RS01320 (PGN_0274) | - | 294444..295025 (-) | 582 | WP_004583806.1 | RNA polymerase sigma factor | - |
Sequence
Protein
Download Length: 246 a.a. Molecular weight: 27445.92 Da Isoelectric Point: 10.0451
>NTDB_id=30989 PGN_RS01305 WP_012457382.1 290164..290904(+) (comF) [Porphyromonas gingivalis ATCC 33277]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYGLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYGLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER
Nucleotide
Download Length: 741 bp
>NTDB_id=30989 PGN_RS01305 WP_012457382.1 290164..290904(+) (comF) [Porphyromonas gingivalis ATCC 33277]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACGGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTACCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACGGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTACCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Porphyromonas gingivalis W83 |
99.593 |
100 |
0.996 |