Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLH_RS15730 Genome accession   NC_010723
Coordinates   3529017..3529970 (-) Length   317 a.a.
NCBI ID   WP_012450393.1    Uniprot ID   A0A0L9YAX7
Organism   Clostridium botulinum E3 str. Alaska E43     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3524017..3534970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLH_RS16635 (CLH_3262) - 3524172..3524330 (-) 159 WP_012451138.1 DUF1540 domain-containing protein -
  CLH_RS15710 (CLH_3263) - 3524598..3525686 (+) 1089 WP_012450204.1 PRK06851 family protein -
  CLH_RS15715 (CLH_3264) - 3526109..3527053 (-) 945 WP_012450881.1 siderophore ABC transporter substrate-binding protein -
  CLH_RS15720 (CLH_3265) - 3527325..3528080 (-) 756 WP_012451100.1 ATP-binding cassette domain-containing protein -
  CLH_RS15725 (CLH_3266) - 3528077..3529027 (-) 951 WP_012451721.1 iron chelate uptake ABC transporter family permease subunit -
  CLH_RS15730 (CLH_3267) ceuB 3529017..3529970 (-) 954 WP_012450393.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  CLH_RS15735 (CLH_3268) - 3530163..3530924 (+) 762 WP_012451198.1 AraC family transcriptional regulator -
  CLH_RS15740 (CLH_3269) sulP 3531449..3533110 (-) 1662 WP_004443280.1 sulfate permease -
  CLH_RS15745 (CLH_3270) dapA 3533707..3534579 (-) 873 WP_012451726.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34885.54 Da        Isoelectric Point: 9.7561

>NTDB_id=30980 CLH_RS15730 WP_012450393.1 3529017..3529970(-) (ceuB) [Clostridium botulinum E3 str. Alaska E43]
MKKIYLLILLVILSIASLFIGVSDISLSDIISLDSEKINLILIGRLPRLISIIFAGVGMSISGLIMQQISRNKFVSPTTA
GTIDFAKLGILVCMIVFPQATMMNKMLLSFTFAILGTLLFMQIQKKIKIKNIVFIPLIGMMLGKIVGSITMFFSYKYDLI
QNINSWMEGDFSLIMKGKYELLYISIPLVIIAAIYANKFTIAGMGEDFCTNLGIKYNRVVNLGLVIVALISSVVVITIGA
IPFLGIIVPNIVTMYYGDNLKNVLGLTALIGPIFLLICDILGRLIIYPYEISISLTVGVIGSVAFLYLIFRRSGHEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=30980 CLH_RS15730 WP_012450393.1 3529017..3529970(-) (ceuB) [Clostridium botulinum E3 str. Alaska E43]
ATGAAAAAAATATACTTGTTAATATTGCTGGTAATATTGTCAATAGCTTCATTATTTATTGGAGTAAGTGATATATCATT
ATCAGATATTATTAGTCTAGATAGTGAAAAAATAAACCTTATATTAATTGGTAGATTGCCAAGGCTTATAAGTATAATCT
TTGCTGGAGTTGGGATGAGTATAAGCGGACTTATAATGCAACAGATAAGTAGAAATAAATTTGTTTCACCTACAACTGCT
GGAACAATAGATTTTGCTAAATTAGGAATATTAGTATGCATGATTGTATTTCCACAGGCAACTATGATGAATAAAATGCT
TTTATCATTTACATTTGCAATACTTGGAACACTGTTATTTATGCAAATACAAAAGAAAATAAAGATTAAAAATATAGTTT
TTATACCTCTTATAGGTATGATGCTTGGAAAAATAGTTGGTTCAATAACTATGTTTTTCTCTTATAAGTATGATCTTATC
CAAAATATAAATTCATGGATGGAAGGCGATTTCTCATTAATTATGAAAGGGAAATATGAACTATTATATATAAGTATACC
TCTTGTAATAATAGCAGCTATATATGCTAATAAGTTTACTATTGCTGGAATGGGAGAGGACTTTTGTACAAATCTAGGAA
TAAAGTATAATCGTGTTGTTAATTTAGGATTAGTAATAGTAGCATTAATTTCATCAGTTGTAGTTATAACAATAGGGGCA
ATACCATTCTTAGGTATTATAGTGCCTAATATAGTTACTATGTATTATGGAGATAATTTAAAGAATGTATTAGGACTTAC
AGCCTTAATAGGACCTATATTTTTATTAATATGTGATATTTTAGGAAGACTTATTATTTATCCATATGAAATATCAATAA
GCTTAACAGTAGGGGTAATAGGTAGCGTAGCATTCCTTTACTTAATATTTAGGAGGTCTGGTCATGAGGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L9YAX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.839

98.107

0.489

Multiple sequence alignment