Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH639_RS02990 | Genome accession | NZ_CP031678 |
| Coordinates | 591551..591964 (+) | Length | 137 a.a. |
| NCBI ID | WP_070828390.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P679-2791 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 586551..596964
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH639_RS02970 (CH639_02970) | - | 587033..589633 (-) | 2601 | WP_084999894.1 | penicillin-binding protein 1A | - |
| CH639_RS02975 (CH639_02975) | comA | 589732..590529 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH639_RS02980 (CH639_02980) | comB | 590530..591036 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH639_RS02985 (CH639_02985) | comC | 591033..591554 (+) | 522 | WP_084999892.1 | competence protein ComC | Machinery gene |
| CH639_RS02990 (CH639_02990) | comD | 591551..591964 (+) | 414 | WP_070828390.1 | pilus assembly protein PilP | Machinery gene |
| CH639_RS02995 (CH639_02995) | comE | 591974..593311 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH639_RS03000 (CH639_03000) | - | 593324..594010 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH639_RS03005 (CH639_03005) | nfuA | 594086..594682 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH639_RS03010 (CH639_03010) | nudC | 594749..595543 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| CH639_RS03015 (CH639_03015) | - | 595579..596169 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| CH639_RS03020 (CH639_03020) | - | 596309..596581 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15629.73 Da Isoelectric Point: 4.4355
>NTDB_id=309779 CH639_RS02990 WP_070828390.1 591551..591964(+) (comD) [Haemophilus influenzae strain P679-2791]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=309779 CH639_RS02990 WP_070828390.1 591551..591964(+) (comD) [Haemophilus influenzae strain P679-2791]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
95.62 |
100 |
0.956 |
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |