Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   D7Y56_RS11560 Genome accession   NZ_CP038147
Coordinates   2261684..2263915 (-) Length   743 a.a.
NCBI ID   WP_015577213.1    Uniprot ID   -
Organism   Streptomyces sp. S501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2256684..2268915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS11550 (D7Y56_11550) - 2257222..2259675 (+) 2454 WP_134665104.1 heavy metal translocating P-type ATPase -
  D7Y56_RS11555 (D7Y56_11555) - 2260188..2261486 (-) 1299 WP_014156200.1 citrate synthase -
  D7Y56_RS11560 (D7Y56_11560) recD/recD2/recDB 2261684..2263915 (-) 2232 WP_015577213.1 ATP-dependent RecD-like DNA helicase Machinery gene
  D7Y56_RS11565 (D7Y56_11565) - 2264063..2264698 (+) 636 WP_015577214.1 SMI1/KNR4 family protein -
  D7Y56_RS11570 (D7Y56_11570) - 2264942..2265706 (+) 765 WP_015577215.1 class I SAM-dependent methyltransferase -
  D7Y56_RS11575 (D7Y56_11575) - 2265746..2267122 (-) 1377 WP_015577216.1 hypothetical protein -
  D7Y56_RS11580 (D7Y56_11580) - 2267340..2267747 (-) 408 WP_015577217.1 RidA family protein -
  D7Y56_RS11585 (D7Y56_11585) - 2267874..2268257 (+) 384 WP_015577218.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80042.55 Da        Isoelectric Point: 6.4599

>NTDB_id=309624 D7Y56_RS11560 WP_015577213.1 2261684..2263915(-) (recD/recD2/recDB) [Streptomyces sp. S501]
MSNSAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWASHPQFGKQFQVDNYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADGVKLLQVDTGLVIDCLAELAQDPEGVVREKVPGPEDGQAVTAVYLVPFHRAEISLAAQVQRLLRTPEDRMPGFQDVD
WDKALGWLAGRTGATLAPEQEAAVRLALTRKVAVLTGGPGCGKSFTVRSVVELARARNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDADEQRLTVLT
DEEEEIAYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLSGGTAEDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=309624 D7Y56_RS11560 WP_015577213.1 2261684..2263915(-) (recD/recD2/recDB) [Streptomyces sp. S501]
ATGTCCAACTCCGCCGTGCTCGAAGGCGTCCTGGAGCGCATCACCTACGCCAACGAGGAGAACGGCTACACCGTGGCCCG
CGTCGACACGGGGCGCGGTGCGGGGGACCTGCTCACCGTCGTCGGCTCGCTCCTCGGTGCCCAGCCCGGCGAGTCCCTGC
GGATGGAGGGGCGTTGGGCCTCGCACCCGCAGTTCGGCAAGCAGTTCCAGGTCGACAACTACACGACGGTCCTCCCGGCG
ACCATCCAGGGCATCCGCCGCTACCTCGGATCGGGCCTGATCAAGGGCATCGGGCCGGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGCCTCGTGGAGGTGCCCGGACTCGGCCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGAGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCTGCCGACGTCTGGGGCATCGGATTCCTCACCGCCGACCGCATCGCGCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTCCAGTACGCCCTTTCGCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGAGCGGCTG
ATCGCCGACGGGGTGAAGCTGCTCCAGGTCGACACGGGGCTCGTCATCGACTGCCTGGCCGAGCTCGCGCAGGACCCGGA
GGGTGTCGTACGGGAGAAGGTGCCGGGCCCCGAGGACGGTCAGGCGGTCACCGCCGTGTACCTGGTCCCCTTCCACCGCG
CCGAGATCTCCCTGGCCGCCCAGGTGCAGCGCCTGCTGCGCACCCCGGAGGACCGGATGCCCGGCTTCCAGGACGTCGAC
TGGGACAAGGCGCTCGGCTGGCTCGCGGGGCGTACGGGGGCCACGCTCGCCCCCGAGCAGGAGGCAGCCGTCCGGCTCGC
GCTCACCCGGAAGGTCGCCGTCCTCACCGGCGGCCCCGGCTGCGGCAAGTCGTTCACCGTCCGGTCCGTGGTCGAGCTGG
CCCGCGCGCGGAACGCCAAGGTCGTGCTCGCCGCGCCCACCGGGCGGGCGGCGAAGAGGCTCTCGGAGCTGACCGGTGCG
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTGAAACCCGGCGGGGACGCGGCGTACGACCGCGAACGGCCGCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCGTCAAGGCCGTGGCGCCCGGTG
CCCACCTCCTCCTGGTCGGCGATGTGGACCAGTTGCCCTCGGTCGGCGCGGGGGAGGTACTGCGCGACCTGCTGGCCGAG
GGCGGACCCGTCCCCGCCGTCCGGCTGACCACCATCTTCCGGCAGGCCCAGAAGTCCGGCGTCGTCACCAACGCCCACCG
CATCAACTCCGGGGTACCGCCGCTGACCCAGGGGCTGGACGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCCG
GAGTGCTCGCCGTCGATGTCGCCGCCCGCCGCATCCCCGCGAAGTTCGGCCTGAATCCCCGCCGCGACGTGCAGGTCCTC
GCCCCGATGCACCGCGGCCCCGCGGGCGCCGGCCATCTCAACGGACTGCTCCAGCAGGCCATCACCCCCGGACGGCCGGG
CCTGCCCGAGAAGCGGTTCGGAGGCCGCGTCTTCCGGGTAGGCGACAAGGTGACACAGATCAGGAACAACTATGACAAGG
GGGAGAACGGAGTCTTCAACGGCACGGTCGGTGTCGTGACCGCGCTCGACGCGGACGAGCAGAGGCTGACCGTCCTCACG
GACGAGGAGGAGGAGATCGCGTACGACTTCGACGAGCTGGACGAACTGGCCCACGCGTACGCCATGACCATCCACCGCTC
GCAGGGCAGCGAGTATCCGGCGGTCGTCATCCCGGTCACCACCAGCGCCTGGATGATGCTCCAGCGGAACCTGCTCTACA
CCGCCGTGACCAGGGCCAAGAAGCTCGTCGTGCTGGTCGGATCGCGCAAGGCCATCGGCCAGGCGGTCCGTACCGTTTCC
GCAGGCAGGCGCTGTACGGCACTGGATTTCCGGCTCAGCGGCGGTACGGCGGAAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(335-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.209

100

0.362