Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E3C75_RS10790 Genome accession   NZ_CP038020
Coordinates   2059067..2059852 (-) Length   261 a.a.
NCBI ID   WP_084826115.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2054067..2064852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS10755 gatC 2054133..2054435 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  E3C75_RS10760 - 2054610..2054828 (-) 219 WP_223899686.1 glycosyltransferase -
  E3C75_RS11915 - 2054767..2054931 (-) 165 WP_231838381.1 glycosyltransferase -
  E3C75_RS10770 - 2055368..2056809 (-) 1442 Protein_2080 6-phospho-beta-glucosidase -
  E3C75_RS10775 msrA 2056962..2057471 (-) 510 Protein_2081 peptide-methionine (S)-S-oxide reductase MsrA -
  E3C75_RS10780 - 2057483..2058330 (-) 848 Protein_2082 MetQ/NlpA family ABC transporter substrate-binding protein -
  E3C75_RS10785 - 2058453..2059004 (-) 552 WP_111679685.1 isochorismatase family cysteine hydrolase -
  E3C75_RS10790 codY 2059067..2059852 (-) 786 WP_084826115.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E3C75_RS10795 - 2060112..2061326 (-) 1215 WP_002951721.1 pyridoxal phosphate-dependent aminotransferase -
  E3C75_RS10800 - 2061680..2062132 (+) 453 WP_084826116.1 universal stress protein -
  E3C75_RS11920 - 2062308..2062882 (+) 575 Protein_2087 IS30 family transposase -
  E3C75_RS11925 - 2062954..2063562 (-) 609 WP_223899685.1 hypothetical protein -
  E3C75_RS10815 pflA 2063774..2064574 (-) 801 WP_111679686.1 pyruvate formate-lyase-activating protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28920.07 Da        Isoelectric Point: 4.4713

>NTDB_id=309276 E3C75_RS10790 WP_084826115.1 2059067..2059852(-) (codY) [Streptococcus thermophilus strain ATCC 19258]
MANLLDKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFKAKQLPEEYI
RGISRVYDTQENIGIDSDLTIFPVELKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDDDLILVEIASTVVGLQLLH
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=309276 E3C75_RS10790 WP_084826115.1 2059067..2059852(-) (codY) [Streptococcus thermophilus strain ATCC 19258]
ATGGCAAATTTGCTTGATAAAACACGTAAAATTACTTCTATCTTGCAACGCTCAGTAGATAGTTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAGTTGGCAGATATTATTGATTGTAATGCTGCTATTGTAAATGGTGGAGGTGCTCTCCTTG
GTTTTGCTATGAAATACAAAACCAACAATGACCGTGTGGAAGAGTTTTTTAAAGCTAAACAACTTCCAGAGGAATACATA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAATATCGGTATTGACAGTGACTTGACCATCTTCCCAGTGGAATTAAA
AGATGATTTCCCTGACGGTTTGACTACAATTGCACCAATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGACGACGACCTTATCTTGGTTGAGATTGCATCTACAGTAGTTGGTTTGCAATTGTTGCAT
CTTCAAACAGAAAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAATATGGCTATTAATACATTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTAGAAGGTCGTTTGACAGCCTCTGTTATCGCGGACCGTA
TCGGAATCACTCGTTCTGTTATTGTTAATGCTCTTCGTAAATTAGAATCAGCTGGTATTATTGAAAGTCGTTCGCTTGGT
ATGAAAGGTACTTACCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.591

98.467

0.636
  codY Bacillus subtilis subsp. subtilis str. 168

52.632

94.636

0.498