Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSH_RS00095 Genome accession   NC_010698
Coordinates   13737..14000 (+) Length   87 a.a.
NCBI ID   WP_000584942.1    Uniprot ID   -
Organism   Helicobacter pylori Shi470     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8737..19000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH_RS00070 (HPSH_00055) groES 9021..9377 (-) 357 WP_000671969.1 co-chaperone GroES -
  HPSH_RS00075 (HPSH_00060) dnaG 9663..11342 (+) 1680 WP_000601610.1 DNA primase -
  HPSH_RS00080 (HPSH_00065) - 11339..12391 (+) 1053 WP_000802570.1 MnmA/TRMU family protein -
  HPSH_RS00085 (HPSH_00075) - 12483..13310 (+) 828 WP_001154882.1 DUF5718 family protein -
  HPSH_RS00090 (HPSH_00080) comB2 13456..13737 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPSH_RS00095 (HPSH_00085) comB3 13737..14000 (+) 264 WP_000584942.1 hypothetical protein Machinery gene
  HPSH_RS00100 (HPSH_00090) comB4 14002..16365 (+) 2364 WP_000890547.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPSH_RS00105 (HPSH_00095) - 16596..18026 (+) 1431 WP_195154830.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=30906 HPSH_RS00095 WP_000584942.1 13737..14000(+) (comB3) [Helicobacter pylori Shi470]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=30906 HPSH_RS00095 WP_000584942.1 13737..14000(+) (comB3) [Helicobacter pylori Shi470]
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment