Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   CKAES1R_RS27675 Genome accession   NZ_CP037926
Coordinates   5786257..5786781 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain AES1R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5781257..5791781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKAES1R_RS27660 (CKAES1R_05445) aroB 5782373..5783479 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  CKAES1R_RS27665 (CKAES1R_05446) aroK 5783529..5784047 (-) 519 WP_003095833.1 shikimate kinase AroK -
  CKAES1R_RS27670 (CKAES1R_05447) pilQ 5784059..5786203 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  CKAES1R_RS27675 (CKAES1R_05448) comL/pilP 5786257..5786781 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  CKAES1R_RS27680 (CKAES1R_05449) pilO 5786778..5787401 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  CKAES1R_RS27685 (CKAES1R_05450) pilN 5787398..5787994 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  CKAES1R_RS27690 (CKAES1R_05451) pilM 5787994..5789058 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  CKAES1R_RS27695 (CKAES1R_05452) - 5789243..5791714 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=308906 CKAES1R_RS27675 WP_003095836.1 5786257..5786781(-) (comL/pilP) [Pseudomonas aeruginosa strain AES1R]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=308906 CKAES1R_RS27675 WP_003095836.1 5786257..5786781(-) (comL/pilP) [Pseudomonas aeruginosa strain AES1R]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362