Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SSUSC84_RS01240 Genome accession   NC_012924
Coordinates   223763..226099 (+) Length   778 a.a.
NCBI ID   WP_011921817.1    Uniprot ID   -
Organism   Streptococcus suis SC84     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 218763..231099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUSC84_RS01220 (SSUSC84_0206) treP 219757..221751 (-) 1995 WP_011921815.1 PTS system trehalose-specific EIIBC component -
  SSUSC84_RS01225 (SSUSC84_0207) treR 221985..222698 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  SSUSC84_RS01230 (SSUSC84_0208) - 222756..223067 (+) 312 WP_002935948.1 hypothetical protein -
  SSUSC84_RS01235 (SSUSC84_0209) - 223064..223612 (+) 549 WP_002935945.1 CvpA family protein -
  SSUSC84_RS01240 (SSUSC84_0210) mutS/mutS2 223763..226099 (+) 2337 WP_011921817.1 endonuclease MutS2 Machinery gene
  SSUSC84_RS01245 (SSUSC84_0211) - 226123..226776 (+) 654 WP_011921818.1 GNAT family N-acetyltransferase -
  SSUSC84_RS01250 (SSUSC84_0212) trxA 226983..227297 (+) 315 WP_011921819.1 thioredoxin -
  SSUSC84_RS11110 - 227525..227575 (-) 51 WP_353735889.1 hypothetical protein -
  SSUSC84_RS01255 (SSUSC84_0213) - 227565..229094 (+) 1530 WP_012774931.1 AMP-binding protein -
  SSUSC84_RS01260 (SSUSC84_0214) msrB 229134..230072 (+) 939 WP_011921822.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SSUSC84_RS01265 (SSUSC84_0215) - 230190..231068 (+) 879 WP_014635840.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87678.47 Da        Isoelectric Point: 6.8323

>NTDB_id=30888 SSUSC84_RS01240 WP_011921817.1 223763..226099(+) (mutS/mutS2) [Streptococcus suis SC84]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSLAATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIR
EAEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEE
RHELNRILQELSDMLRPHGGVIRNNAWLIGHIDFVRAKHLFARDHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGS
QLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVEILRAA
DQDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVP
GRSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNREREN
ELNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIKREAKVGDDIIVTA
YGQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEF
IDQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQIKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=30888 SSUSC84_RS01240 WP_011921817.1 223763..226099(+) (mutS/mutS2) [Streptococcus suis SC84]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCATCGTATCCAACAGGCCTTCGACGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGGCTGCTACTAGTGACATCGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCAGTTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCT
CCCTCCAGTCCATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATTCGAAGAAAAATCCGT
GAAGCTGAAGATCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGCGACATGCTGTCCGATAGCATTTTGGC
AAGCCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCAGGGGTTGTCCATGACATTTCAG
CTTCGGGTTCGACCGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAA
CGCCATGAGCTCAACCGTATCTTGCAGGAATTGTCGGATATGCTCCGTCCGCATGGTGGCGTGATTCGTAACAATGCCTG
GCTTATCGGACATATTGATTTCGTCCGTGCTAAGCATCTCTTTGCGCGTGATCATCAAGCAGTTGTACCCAAACTATCTG
AGAAGCAGGATATTGCCCTTCTCAACGTTCGGCATCCGCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGT
CAGTTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTTAAGACCTTGGGATTGACCCATCT
GATGGCCCAGTCTGGTTTGCCTATCTTGGCTGATAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGATATTG
GGGATGAACAGTCGATTGAGCAGAGTTTATCAACCTTCTCCAGTCACATGACCCACACGGTGGAAATTTTAAGAGCAGCT
GATCAAGATTCTCTCATTCTCTTTGACGAGTTGGGAGCTGGGACAGATCCGCAGGAGGGTGCGTCTTTGGCTATGGCTAT
TTTGGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCGACCACCCACTACCCTGAGCTTAAGGCCTACGGGATAGAAA
CCTCTGGTATTGAAAATGCCAGCATGGAGTTTGATAGCAATAGCCTGCGTCCGACCTATAAGTTTATGCAGGGTGTTCCT
GGTCGCTCCAATGCCTTTGAAATTGCCCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGA
TACAGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAACGTCTGGATAAGATTC
GTGATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGCGGGAAAAT
GAGCTCAACAAGGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCT
CCATGCTGCAGCTAGTCTTAAGCCCCATCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGG
ATCTGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTAAGAGGGAAGCCAAGGTGGGCGATGACATTATCGTTACAGCT
TATGGACAACGCGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTT
GGCTAAAGATGAGTTTGAGTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTG
CCAATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGCAAACGTTACGAAGAGGCTATGATGGAGCTGGATGAATTT
ATCGACCAGGCCCTTCTCAATAACCTAGCCCAAGTCGATATTGTCCACGGTATTGGTACTGGAGTCATCCGAGAAGGGGT
GACCAAGTACCTACGCCGCAACAAGCAGATCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGATCAGGCTGTACTA
TTGTGACGTTTAAATAG

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(632-671)

MutS domain V (MutS_V)

(325-505)

Smr domain (Smr)

(703-778)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.52

100

0.402

Multiple sequence alignment