Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EZV63_RS10460 Genome accession   NZ_CP036534
Coordinates   2385385..2387313 (+) Length   642 a.a.
NCBI ID   WP_037765677.1    Uniprot ID   -
Organism   Streptomyces sp. VN1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2380385..2392313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS10425 (EZV63_10545) - 2380555..2380710 (-) 156 WP_107060505.1 DUF6131 family protein -
  EZV63_RS10445 (EZV63_10565) - 2381677..2381982 (+) 306 WP_031033927.1 YtxH domain-containing protein -
  EZV63_RS10450 (EZV63_10570) - 2382037..2383485 (+) 1449 WP_037765672.1 FGGY family carbohydrate kinase -
  EZV63_RS10455 (EZV63_10575) rcrP 2383652..2385385 (+) 1734 WP_037765674.1 ABC transporter ATP-binding protein Regulator
  EZV63_RS10460 (EZV63_10580) rcrQ 2385385..2387313 (+) 1929 WP_037765677.1 ABC transporter ATP-binding protein Regulator
  EZV63_RS10465 (EZV63_10585) - 2387453..2388737 (-) 1285 Protein_2031 RNA polymerase sigma factor -
  EZV63_RS10470 (EZV63_10590) dnaG 2388856..2390769 (-) 1914 WP_031033939.1 DNA primase -
  EZV63_RS10475 (EZV63_10595) - 2390799..2392064 (-) 1266 WP_070388011.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69639.93 Da        Isoelectric Point: 5.5862

>NTDB_id=308336 EZV63_RS10460 WP_037765677.1 2385385..2387313(+) (rcrQ) [Streptomyces sp. VN1]
MAGPAGRMMAGGGPDQRSMDFKGSVKRLLARFRPERATLFTLLACVVLSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKDQVLASMRERGDGDVADMLRSTDFTPGQGIDFGAVGEVLLLALATFSVAGLLMVVATRLVNRSVNRTVFRMREDVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNMQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSYVVATRVGK
RSQPQFVQQWRSTGQLNAHIEEMYTGHSLVKVFGRQEESAKQFAEQNDALYEAGFRAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGARPENLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLVTIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=308336 EZV63_RS10460 WP_037765677.1 2385385..2387313(+) (rcrQ) [Streptomyces sp. VN1]
ATGGCGGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGTCCCGACCAGCGGTCGATGGACTTCAAGGGGTCGGTCAAACG
GCTCCTCGCCCGGTTCCGGCCGGAACGGGCGACGCTGTTCACGCTGCTGGCGTGCGTCGTCCTCAGCGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGCGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGTGCC
ACGAAGGACCAGGTCCTCGCGTCCATGCGCGAGCGCGGTGACGGCGACGTGGCCGACATGCTCCGCAGCACGGACTTCAC
GCCGGGGCAGGGCATCGACTTCGGCGCCGTCGGCGAGGTGCTGCTGCTCGCGCTGGCGACGTTCTCGGTGGCGGGGCTGC
TGATGGTGGTGGCGACGCGGCTGGTGAACCGGTCGGTCAACCGGACGGTGTTCCGGATGCGCGAGGACGTGCAGGCGAAA
CTGTCGAGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATGCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTGACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCGTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTACGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGGCAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CTCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GGTTCAGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTGGGCGGCCTGCGGGTGGCCTCGGGCACGCTGTCCATCGGCGACGTGCAGGCCTTCGTCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCGGAGCGGATCTTCGAGC
TGCTCGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGCCCGGCCGGAGAACCTGCGCGGGCGGGTGGAGCTGGAG
CACGTCTCCTTCCGCTACGACCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTCGAGCCGGGCCACACGGTCGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGCCGGA
TCACGCTGGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCCCGCGACGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGATTCGTACGGACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGCGAGAAGCAGCTCGTCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCGTCCGTGGACACGCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTCGTGATGGAGGACGGGGCGATCGTGGAACAGG
GCGCGCACGCGGAGCTGCTCGCCGCGGACGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.357

96.417

0.399

Multiple sequence alignment