Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EZZ78_RS05370 Genome accession   NZ_CP036492
Coordinates   1172582..1173007 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain Paer4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1167582..1178007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ78_RS05350 (EZZ78_05460) ileS 1167739..1170570 (+) 2832 WP_003112822.1 isoleucine--tRNA ligase -
  EZZ78_RS05355 (EZZ78_05465) lspA 1170563..1171072 (+) 510 WP_003112823.1 signal peptidase II -
  EZZ78_RS05360 (EZZ78_05470) fkpB 1171065..1171505 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  EZZ78_RS05365 (EZZ78_05475) ispH 1171591..1172535 (+) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EZZ78_RS05370 (EZZ78_05480) comF 1172582..1173007 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  EZZ78_RS05375 (EZZ78_05485) pilY2 1173004..1173351 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  EZZ78_RS05380 (EZZ78_05490) pilY1 1173353..1176838 (-) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -
  EZZ78_RS05385 (EZZ78_05495) pilX 1176850..1177437 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=307972 EZZ78_RS05370 WP_003094721.1 1172582..1173007(-) (comF) [Pseudomonas aeruginosa strain Paer4]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=307972 EZZ78_RS05370 WP_003094721.1 1172582..1173007(-) (comF) [Pseudomonas aeruginosa strain Paer4]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment