Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AB849_RS12820 Genome accession   NZ_CP036487
Coordinates   2516430..2518850 (-) Length   806 a.a.
NCBI ID   WP_049719916.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2511430..2523850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS12795 (AB849_012795) - 2511886..2512548 (-) 663 WP_049719918.1 flavin reductase family protein -
  AB849_RS12800 (AB849_012800) - 2512548..2513720 (-) 1173 WP_049719917.1 homogentisate 1,2-dioxygenase -
  AB849_RS12805 (AB849_012805) - 2514118..2514750 (-) 633 WP_037993953.1 FMN-dependent NADH-azoreductase -
  AB849_RS12810 (AB849_012810) - 2514841..2515490 (-) 650 Protein_2517 FMN-dependent NADH-azoreductase -
  AB849_RS13640 - 2515638..2515766 (-) 129 WP_255347154.1 hypothetical protein -
  AB849_RS12815 (AB849_012815) - 2515976..2516491 (-) 516 WP_037993958.1 adenine phosphoribosyltransferase -
  AB849_RS12820 (AB849_012820) recJ 2516430..2518850 (-) 2421 WP_049719916.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB849_RS13680 secF 2518968..2519888 (-) 921 WP_338067489.1 protein translocase subunit SecF -
  AB849_RS13685 secD 2519869..2521098 (-) 1230 WP_309485127.1 protein translocase subunit SecD -
  AB849_RS12830 (AB849_012830) - 2521206..2521520 (-) 315 WP_231564570.1 post-transcriptional regulator -
  AB849_RS12835 (AB849_012835) spoVB 2521708..2523276 (+) 1569 WP_049719915.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 91321.07 Da        Isoelectric Point: 6.2546

>NTDB_id=307936 AB849_RS12820 WP_049719916.1 2516430..2518850(-) (recJ) [Thermoactinomyces vulgaris strain CDF]
MLHARARWDVEPVDEDLSEAMSKELDIHPIISKMLIRRGVKEIPEARRFLNPSLADLNDPFLLDGMETAVQRIRQALRDK
EPILVYGDYDVDGVSSTCLMLKTLRRLGATVDYYIPHRFREGYGINQEALKQAKERGFRLVLSVDTGIAAVKEAAYAKEL
GLDLIITDHHEPQETLPDALAVINPKKPGCPYPFKMLAGVGVAFKLATALLQEVPEEWLDIAALGTIADLVPLVEENRIL
ACYGLKRMSQTVHIGLKALIQACDIDHDVSASHVGYLLGPRINACGRLDTADTAVRLLMTEDPEEAESLAGELDALNRKR
QQLVDEMTLEAVEEIEKNPDKHKYVIVVARPGWNVGVVGIVASRLVEKYYRPVVVLGIDEEKQTAKGSARSIQGFHLFQA
LSECKEWLPEFGGHEMAAGMTLEARNISKLHERLSLLAKERIRPEDYVPLKWAEGELDAEQIGADLIEQLEILAPFGVGN
PQPLFIVKEMPVARIQRMGREQEHVKLYLNRKNGILSAVGFRMGDQADGLTPHGRIRLLGELEMNEWNGHRAPQIIIRDM
EVRHLQVFDFRSNRKEWSQLAGLNPEEICFICSNGSTLFKQLSQSTNRIVVTWEELMDKKQQESMKQAKHLVLAESPPTL
EVFRNRLKDGREAERIYVMFGDKEFDHLLPKTPSREDFSKLYRVIAGKGKISLRKYMSSLMRVTGLQKRVISFMIQVFEE
LGFVSLDQEDLIVHENPAKRSLMESKTYQHQRERERVLETLVYSSYKDLCRYLFETISFTHMGGYTDGFQRKDSSDSRLS
ATGGAV

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=307936 AB849_RS12820 WP_049719916.1 2516430..2518850(-) (recJ) [Thermoactinomyces vulgaris strain CDF]
ATGTTGCATGCAAGAGCAAGGTGGGATGTGGAGCCGGTGGATGAGGATTTAAGCGAAGCGATGTCTAAAGAACTGGACAT
TCATCCCATCATTTCAAAAATGCTGATTCGCCGGGGGGTCAAAGAGATCCCGGAGGCCCGCCGTTTTTTAAATCCTTCCC
TTGCCGACCTGAATGATCCTTTCCTGCTGGATGGAATGGAAACCGCTGTCCAAAGAATTCGCCAGGCCCTCAGGGACAAA
GAGCCGATACTGGTTTACGGGGATTATGATGTGGACGGCGTCAGCAGCACCTGTTTGATGCTGAAAACGCTCCGGCGGTT
GGGGGCAACCGTGGATTATTATATTCCCCATCGTTTCCGGGAAGGATACGGGATCAATCAAGAGGCCTTAAAACAAGCCA
AGGAGCGCGGTTTCCGTCTCGTTCTTTCAGTGGATACGGGGATTGCCGCGGTCAAGGAGGCGGCTTATGCCAAAGAGTTG
GGATTGGATCTCATTATTACTGATCACCATGAACCCCAGGAAACGCTGCCGGATGCATTGGCGGTGATCAATCCGAAGAA
GCCGGGATGCCCCTATCCTTTTAAAATGCTTGCCGGGGTCGGTGTCGCTTTCAAACTGGCCACAGCTTTGTTGCAAGAGG
TGCCGGAAGAGTGGCTGGACATCGCTGCATTGGGAACCATTGCCGATCTGGTTCCGCTGGTTGAGGAAAATCGCATTTTG
GCCTGTTACGGATTGAAGAGAATGAGCCAGACGGTTCATATTGGATTGAAGGCTTTGATTCAGGCTTGCGATATTGATCA
TGACGTGTCGGCTAGTCATGTGGGATACCTGCTCGGTCCCCGGATCAATGCATGCGGACGGTTGGACACAGCGGACACGG
CGGTCCGTTTGCTGATGACGGAGGACCCGGAAGAAGCGGAATCCCTTGCGGGAGAACTGGATGCGCTCAATCGAAAACGG
CAACAATTGGTGGATGAGATGACCCTGGAAGCAGTGGAAGAGATTGAGAAGAATCCGGACAAGCACAAGTATGTGATTGT
CGTCGCCCGCCCGGGATGGAATGTGGGCGTGGTCGGCATTGTCGCGTCCCGGTTGGTCGAAAAATATTACCGGCCGGTTG
TGGTGTTGGGAATCGACGAAGAAAAACAAACGGCCAAGGGATCGGCGAGAAGCATTCAAGGATTTCATTTGTTTCAAGCT
TTGTCCGAGTGTAAAGAATGGTTGCCCGAATTTGGCGGACACGAAATGGCTGCGGGAATGACGCTGGAGGCCCGCAACAT
TTCCAAACTGCATGAGCGGCTTTCGTTGTTGGCGAAAGAACGGATCCGCCCGGAAGATTACGTGCCGCTCAAATGGGCGG
AAGGAGAATTGGATGCCGAGCAAATCGGGGCAGACCTCATTGAACAGCTGGAGATCCTGGCTCCGTTTGGAGTGGGAAAT
CCACAGCCGCTGTTTATTGTAAAAGAAATGCCTGTCGCGCGGATTCAGCGCATGGGAAGGGAACAAGAACATGTCAAATT
GTATTTGAACCGGAAGAACGGGATCTTAAGCGCGGTCGGTTTTCGCATGGGGGATCAGGCTGACGGGCTCACTCCCCACG
GCCGGATCCGTTTGCTCGGTGAGCTGGAGATGAATGAATGGAACGGCCACAGAGCTCCCCAAATCATTATCCGGGATATG
GAGGTCCGCCATCTGCAAGTGTTTGATTTCAGAAGCAACCGGAAAGAATGGTCGCAGCTTGCCGGATTGAACCCGGAAGA
AATATGTTTTATCTGTTCCAACGGCTCAACGCTGTTTAAACAATTGTCCCAATCGACGAATCGAATCGTGGTGACATGGG
AAGAGCTGATGGATAAAAAGCAACAGGAAAGCATGAAGCAAGCCAAACATCTGGTCTTGGCGGAATCGCCCCCGACATTG
GAGGTGTTTCGTAACCGCTTGAAAGACGGACGGGAAGCGGAACGGATTTATGTCATGTTCGGGGATAAAGAGTTTGATCA
TTTGTTGCCGAAAACCCCTTCCCGTGAAGATTTTTCAAAGTTGTACCGGGTGATTGCAGGGAAAGGGAAGATCTCCCTGC
GCAAATATATGTCTTCGCTGATGCGGGTGACAGGATTGCAAAAGCGTGTCATTTCTTTTATGATTCAAGTGTTTGAAGAA
TTAGGGTTTGTCAGCTTGGATCAGGAAGATTTGATCGTCCATGAAAACCCGGCCAAGAGGTCGCTGATGGAATCCAAAAC
ATATCAACACCAAAGAGAACGGGAACGGGTTTTGGAGACACTGGTTTATTCAAGCTATAAAGATTTGTGCCGTTATTTGT
TTGAAACGATTTCTTTTACACACATGGGAGGATATACAGATGGATTTCAAAGAAAAGATTCGAGTGATTCCAGACTTTCC
GCAACCGGGGGTGCGGTTTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(314-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-772)

RecJ OB domain (RecJ_OB)

(454-559)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

44.788

96.402

0.432