Detailed information    

insolico Bioinformatically predicted

Overview


Name   ctsG   Type   Machinery gene
Locus tag   A2J15_RS00440 Genome accession   NZ_CP031611
Coordinates   83977..84504 (+) Length   175 a.a.
NCBI ID   WP_066776442.1    Uniprot ID   A0A6A7JQR5
Organism   Campylobacter hepaticus strain HV10     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 78977..89504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2J15_RS00415 (A2J15_000415) - 79435..79770 (+) 336 WP_066775987.1 hypothetical protein -
  A2J15_RS00420 (A2J15_000420) - 79781..80506 (+) 726 WP_066775990.1 phosphatidate cytidylyltransferase -
  A2J15_RS00425 (A2J15_000425) dxr 80503..81573 (+) 1071 WP_066775992.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  A2J15_RS00430 (A2J15_000430) - 81575..82969 (+) 1395 WP_066775997.1 M99 family carboxypeptidase catalytic domain-containing protein -
  A2J15_RS00435 (A2J15_000435) tsaD 82966..83973 (+) 1008 WP_066775999.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  A2J15_RS00440 (A2J15_000440) ctsG 83977..84504 (+) 528 WP_066776442.1 type II secretion system protein Machinery gene
  A2J15_RS00445 (A2J15_000445) - 84491..85738 (+) 1248 WP_066776001.1 DUF2920 family protein -
  A2J15_RS00450 (A2J15_000450) - 85747..87570 (+) 1824 WP_066776004.1 motility associated factor glycosyltransferase family protein -
  A2J15_RS00455 (A2J15_000455) - 87654..89375 (+) 1722 WP_066776007.1 flagellin A -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19348.26 Da        Isoelectric Point: 5.3253

>NTDB_id=307918 A2J15_RS00440 WP_066776442.1 83977..84504(+) (ctsG) [Campylobacter hepaticus strain HV10]
MKKAFTILELVFVVVILGILLAFALPKFSSSKNEAELSRSLNNLKTLINDISIYALKNDTLASMSMMSNVDEVENVDLRH
LNGVKEVGFGVGDDRQCLKLVFIDRADFVLMGISSNEESKNAIINKAGGTRENFDDIDFTSTSSSRICVALSKSENFKNL
ARKTYLLIGELNDSK

Nucleotide


Download         Length: 528 bp        

>NTDB_id=307918 A2J15_RS00440 WP_066776442.1 83977..84504(+) (ctsG) [Campylobacter hepaticus strain HV10]
ATGAAAAAAGCTTTTACTATACTTGAACTTGTTTTTGTGGTGGTGATTTTGGGGATTTTGCTTGCTTTTGCTTTACCTAA
ATTTAGTTCTAGTAAAAATGAAGCTGAACTGAGTAGATCGTTAAATAATCTTAAAACTTTGATCAATGATATAAGTATTT
ATGCTTTAAAAAATGATACTTTGGCTTCTATGAGTATGATGAGCAATGTTGATGAAGTTGAAAATGTTGATCTTAGGCAT
TTAAATGGGGTTAAAGAAGTTGGTTTTGGTGTGGGTGATGATAGGCAGTGTTTAAAACTTGTTTTTATTGATAGGGCTGA
TTTTGTTTTGATGGGAATTTCAAGCAATGAAGAGAGTAAAAATGCTATTATTAATAAAGCTGGTGGTACTAGGGAGAATT
TTGATGATATTGATTTTACTAGCACTTCAAGTAGTAGAATTTGTGTGGCTTTAAGTAAGAGTGAAAATTTTAAAAATTTG
GCTAGAAAAACTTATCTTTTAATAGGGGAGCTTAATGATAGTAAATGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6A7JQR5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

71.006

96.571

0.686


Multiple sequence alignment