Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   AB849_RS08260 Genome accession   NZ_CP036487
Coordinates   1599396..1601651 (+) Length   751 a.a.
NCBI ID   WP_037993263.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1594396..1606651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS08230 (AB849_008230) - 1594525..1595115 (+) 591 WP_037993276.1 hypothetical protein -
  AB849_RS08235 (AB849_008235) - 1595253..1595435 (+) 183 WP_049720416.1 hypothetical protein -
  AB849_RS08240 (AB849_008240) rarA 1595474..1596811 (-) 1338 WP_037993272.1 AAA family ATPase Machinery gene
  AB849_RS08245 (AB849_008245) cymR 1597108..1597527 (+) 420 WP_037993270.1 cysteine metabolism transcriptional regulator CymR -
  AB849_RS08250 (AB849_008250) - 1597608..1598750 (+) 1143 WP_049720415.1 cysteine desulfurase family protein -
  AB849_RS08255 (AB849_008255) - 1598821..1599327 (+) 507 WP_037993265.1 hypothetical protein -
  AB849_RS08260 (AB849_008260) recD/recD2/recDB 1599396..1601651 (+) 2256 WP_037993263.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB849_RS08265 (AB849_008265) - 1601716..1602219 (+) 504 WP_049720414.1 PRC-barrel domain-containing protein -
  AB849_RS08270 (AB849_008270) - 1602235..1602435 (+) 201 WP_037993262.1 hypothetical protein -
  AB849_RS08275 (AB849_008275) - 1602463..1602663 (+) 201 WP_037993259.1 hypothetical protein -
  AB849_RS08280 (AB849_008280) - 1602781..1603854 (+) 1074 WP_309485132.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 85254.49 Da        Isoelectric Point: 5.0231

>NTDB_id=307912 AB849_RS08260 WP_037993263.1 1599396..1601651(+) (recD/recD2/recDB) [Thermoactinomyces vulgaris strain CDF]
MNTQLDLFQESYVKGVFKQEIFYNEETGYGVFILKVTDASEEVEEEEITVVGNMLRPYQEEVYCCYGEWRNHPKFGRQWY
AHRVQKEIPRSRDAIIRYLSSGLFSGVGQKTAEKIVDFLGTEALDKIANDPRCLEEIKGISAAKARKIAEQLHDHQGLEQ
ALVYLYQFGIGPALALRIVQTYKHETISILKENPYRMIEEIDGIGFRRADEIAKAQGLSEDAPERFQAALLYVIKEASLS
RGHVYATWEQLNEAVNDLLGEEAVRWFPEEKRTLYIEHLLDDDRLILEDGRYYLPSLYYAEYGLAMRVKQLLEEPFEPDY
SVADIYGKIGEIEEELSVSYAEKQRDALITAMLSSLMILTGGPGTGKTTVIQGICQLFSRLNEISINPEDYKGTEKPFPI
RLVAPTGRAAKRMSETTGLPAMTIHRLLGWKGEFFEHHADHPIEGSLLIVDEVSMLDIWLANSLFRAIPKGMQVILVGDQ
DQLPSVGPGQVLHHLLQVKEIPRAELTEIFRQQEGSSIIELAHAVKNGEVPDDLLLPRPDRRFFSCKKEQALSVIVQTVV
NAVKKGYTLFDIQVLAPIYKGPVGVNRINEEIQAVLNPPGPQKKEIAWGDTVFRLGDKVLQLVNHTEHPVYNGDMGIITS
IDETASGDQPVLWVRYDRLEVPYKKTQLGQISLAYACSVHKAQGSEFPIVVFPVLFAFRRMLERNLIYTGITRSKSYLIM
CGEKEALVEGLKNQRGEERNSRLQDLIEEDW

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=307912 AB849_RS08260 WP_037993263.1 1599396..1601651(+) (recD/recD2/recDB) [Thermoactinomyces vulgaris strain CDF]
ATGAATACACAGTTGGATCTGTTTCAAGAAAGCTATGTCAAAGGCGTTTTCAAACAGGAAATTTTTTATAACGAGGAAAC
CGGATATGGCGTGTTTATATTGAAGGTGACGGATGCTTCCGAGGAAGTGGAGGAAGAGGAGATCACCGTAGTCGGCAATA
TGTTGCGCCCGTATCAGGAAGAAGTTTATTGTTGCTACGGAGAGTGGAGAAACCATCCCAAGTTTGGCCGGCAATGGTAT
GCCCATCGCGTGCAAAAAGAGATTCCGCGCTCCAGAGACGCCATCATCCGTTATCTTTCCAGCGGGCTGTTCTCCGGCGT
GGGGCAAAAGACGGCAGAAAAAATCGTTGATTTTTTGGGGACGGAGGCGCTCGACAAAATTGCAAACGATCCCCGTTGTT
TGGAGGAAATCAAAGGGATTTCGGCCGCAAAAGCCCGGAAAATCGCTGAGCAACTTCATGACCATCAGGGACTGGAGCAA
GCGTTGGTTTATTTGTATCAATTCGGAATCGGCCCGGCCTTGGCCTTGCGGATCGTTCAAACATATAAACATGAGACCAT
CTCCATTCTGAAAGAAAACCCCTACCGGATGATTGAAGAAATTGACGGAATCGGGTTTCGGCGGGCCGATGAAATTGCCA
AAGCACAAGGGCTCAGCGAAGATGCGCCGGAGCGTTTTCAAGCCGCGTTGCTGTATGTGATCAAGGAAGCCTCTCTGTCC
CGGGGACATGTTTACGCCACTTGGGAACAGTTGAACGAAGCGGTCAATGATCTGTTGGGGGAAGAGGCGGTCCGATGGTT
TCCGGAAGAGAAACGGACGCTTTATATTGAGCATCTGTTGGATGATGACCGGTTGATATTAGAAGACGGCCGCTATTATC
TGCCTTCGTTGTATTACGCGGAATACGGGCTTGCCATGCGGGTCAAGCAATTGCTGGAGGAGCCGTTTGAGCCGGATTAC
TCGGTGGCGGACATTTACGGAAAAATCGGGGAGATTGAAGAAGAGTTGTCAGTCAGTTATGCCGAAAAGCAGAGAGATGC
CTTGATCACGGCGATGTTGTCTTCCTTGATGATCTTGACCGGTGGGCCGGGAACGGGGAAGACCACCGTGATCCAAGGGA
TTTGTCAGCTGTTTTCCCGCCTGAATGAAATTTCCATCAATCCCGAGGATTACAAAGGAACGGAGAAGCCGTTTCCCATC
CGGCTGGTTGCGCCCACCGGGCGGGCCGCCAAGCGGATGTCTGAAACCACGGGGCTTCCGGCAATGACGATTCACCGGTT
GTTGGGATGGAAAGGAGAATTTTTTGAGCATCATGCCGATCATCCGATTGAAGGAAGTTTGTTAATTGTGGACGAGGTTT
CGATGCTCGACATCTGGCTGGCCAATTCACTTTTCCGGGCGATTCCAAAGGGGATGCAGGTGATTTTGGTCGGGGATCAA
GACCAGCTTCCTTCCGTGGGACCCGGTCAGGTTTTGCATCATCTCTTGCAGGTGAAAGAAATTCCCCGTGCCGAGTTGAC
GGAAATTTTCCGGCAACAGGAAGGCTCTTCGATCATTGAGCTGGCGCATGCCGTGAAAAACGGTGAGGTTCCGGATGATT
TGTTGTTGCCCCGGCCCGACCGCCGTTTTTTTTCGTGCAAAAAAGAACAAGCGCTGTCCGTCATAGTGCAAACCGTCGTC
AATGCCGTCAAAAAAGGGTACACGTTGTTTGACATCCAGGTTCTGGCCCCGATTTACAAAGGTCCCGTCGGGGTGAACCG
CATCAACGAAGAGATTCAAGCCGTTTTAAATCCCCCGGGCCCGCAAAAAAAAGAAATTGCTTGGGGAGACACGGTGTTTC
GGTTGGGAGACAAAGTGTTGCAGCTTGTCAATCACACGGAACATCCGGTTTATAACGGGGATATGGGCATCATCACCTCC
ATTGACGAAACGGCTTCCGGGGATCAGCCGGTGTTGTGGGTGCGGTACGACCGGTTGGAAGTTCCTTATAAAAAGACGCA
ATTGGGCCAAATTTCCCTGGCATATGCCTGTTCCGTCCATAAGGCGCAAGGATCCGAATTTCCGATTGTGGTGTTTCCGG
TATTATTTGCTTTTCGCCGGATGCTGGAGCGGAATCTGATTTATACGGGGATTACCCGGAGCAAATCGTATCTGATCATG
TGCGGGGAAAAGGAAGCCTTGGTCGAGGGATTGAAAAACCAACGGGGTGAGGAACGAAACAGCCGGCTTCAAGATTTGAT
TGAGGAAGACTGGTAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

AAA domain (AAA_30)

(340-532)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

Helix-hairpin-helix domain (HHH_5)

(105-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

48.933

99.867

0.489