Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB849_RS01065 Genome accession   NZ_CP036487
Coordinates   208993..210003 (-) Length   336 a.a.
NCBI ID   WP_049719791.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 203993..215003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS01050 (AB849_001050) ytaF 204536..205198 (-) 663 WP_037993427.1 sporulation membrane protein YtaF -
  AB849_RS01055 (AB849_001055) mutM 205262..206086 (-) 825 WP_037993430.1 DNA-formamidopyrimidine glycosylase -
  AB849_RS01060 (AB849_001060) polA 206099..208747 (-) 2649 WP_049719792.1 DNA polymerase I -
  AB849_RS01065 (AB849_001065) cytR 208993..210003 (-) 1011 WP_049719791.1 LacI family DNA-binding transcriptional regulator Regulator
  AB849_RS01070 (AB849_001070) - 210125..211174 (-) 1050 WP_049719790.1 Gfo/Idh/MocA family oxidoreductase -
  AB849_RS01075 (AB849_001075) iolE 211225..212121 (-) 897 WP_049719789.1 myo-inosose-2 dehydratase -
  AB849_RS01080 (AB849_001080) iolD 212162..214087 (-) 1926 WP_049719788.1 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37063.78 Da        Isoelectric Point: 8.2316

>NTDB_id=307873 AB849_RS01065 WP_049719791.1 208993..210003(-) (cytR) [Thermoactinomyces vulgaris strain CDF]
MKVTIYDVAKRAGVSIATVSKVINNQTGNMRDSTKRRVQKAMEELNYHPNIMASALMGKGTKTVGLLVPDISNPFFSEIA
GIIENRAHERGYSVILCSTGENEEKEKKYVELLQNKLIDGFIIGSTFQNKNILAELIQNRLPVVLLTQDDPSIDAPKVIV
DDFKGGYEATIHHLQNGHCKIAIISEQWALSSVKRTEGYLQALKTYGIEPKPEYMIKTRGSIPNGMKALDDFFRLPDPPT
AIFACNDQLAIGVILGAKEKGIPIPGQLSLVGFDDTILARATYPRLTTVAQPISELGNSAVDLLIDKIQTGRFQSQRILY
NPELIIRETTGKNPAV

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=307873 AB849_RS01065 WP_049719791.1 208993..210003(-) (cytR) [Thermoactinomyces vulgaris strain CDF]
ATGAAAGTAACCATTTATGATGTGGCGAAAAGAGCCGGCGTTTCCATTGCAACGGTTTCAAAAGTGATCAACAACCAAAC
CGGCAATATGCGCGATTCAACAAAAAGACGGGTCCAAAAAGCGATGGAAGAGTTGAATTATCATCCGAACATCATGGCTT
CGGCGCTCATGGGAAAAGGGACGAAAACCGTGGGGTTGTTGGTGCCGGATATATCCAATCCCTTTTTCTCGGAAATTGCC
GGAATCATCGAAAACCGGGCGCATGAACGGGGCTACAGTGTGATTTTGTGCAGTACCGGTGAAAATGAAGAAAAGGAAAA
GAAGTATGTGGAACTGTTACAAAACAAACTGATCGACGGTTTTATCATCGGTTCCACCTTCCAAAATAAAAACATCCTGG
CCGAATTGATCCAAAACCGGCTGCCGGTGGTGTTGCTGACGCAGGACGACCCGTCCATCGATGCACCGAAAGTGATTGTG
GATGACTTTAAAGGCGGCTATGAAGCAACCATTCACCATTTACAAAACGGGCACTGCAAAATTGCCATCATCAGTGAGCA
ATGGGCCCTTTCCAGCGTGAAACGGACGGAAGGATATTTGCAAGCCCTTAAAACTTACGGCATTGAACCGAAACCGGAGT
ATATGATCAAAACCAGGGGTTCGATTCCCAACGGGATGAAAGCCTTGGACGACTTCTTCCGCTTGCCGGATCCGCCGACT
GCCATTTTTGCCTGCAATGACCAGTTGGCCATCGGCGTGATTTTGGGGGCCAAAGAAAAAGGAATCCCCATTCCCGGTCA
GCTGTCTTTGGTCGGCTTTGATGACACCATTCTGGCAAGGGCCACCTACCCGCGCCTGACCACGGTGGCCCAACCGATCT
CCGAACTGGGAAATTCGGCGGTGGATTTGTTGATCGACAAAATCCAAACGGGCCGGTTTCAAAGCCAACGCATTTTGTAT
AACCCGGAATTGATCATCCGGGAAACAACGGGCAAAAACCCGGCGGTATGA

Domains

Predicted by InterProScan.

Periplasmic binding proteins and sugar binding domain of LacI family (Peripla_BP_1)

(61-320)

Bacterial regulatory proteins, lacI family (LacI)

(4-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.231

96.726

0.36

Multiple sequence alignment