Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L3107_RS11125 Genome accession   NZ_CP031538
Coordinates   2159238..2160599 (-) Length   453 a.a.
NCBI ID   WP_021164999.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 3107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2154238..2165599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3107_RS11090 (L3107_2165) - 2154339..2154662 (-) 324 WP_021165005.1 DUF1048 domain-containing protein -
  L3107_RS11095 (L3107_2166) - 2154659..2154997 (-) 339 WP_011677133.1 DUF1048 domain-containing protein -
  L3107_RS11100 (L3107_2167) - 2154990..2155346 (-) 357 WP_021165004.1 PadR family transcriptional regulator -
  L3107_RS11105 (L3107_2168) - 2155468..2156097 (-) 630 WP_011677135.1 hypothetical protein -
  L3107_RS11110 (L3107_2169) - 2156155..2157240 (-) 1086 WP_021214141.1 PIN/TRAM domain-containing protein -
  L3107_RS11115 (L3107_2170) - 2157507..2158190 (+) 684 WP_015082909.1 YoaK family protein -
  L3107_RS11120 (L3107_2171) - 2158247..2159137 (+) 891 WP_064305155.1 IS982-like element IS982B family transposase -
  L3107_RS11125 (L3107_2172) radA 2159238..2160599 (-) 1362 WP_021164999.1 DNA repair protein RadA Machinery gene
  L3107_RS11130 (L3107_2173) - 2160769..2161782 (-) 1014 WP_021164998.1 glycosyltransferase family 2 protein -
  L3107_RS11135 (L3107_2174) - 2161764..2162309 (-) 546 WP_021164997.1 HAD family hydrolase -
  L3107_RS11140 (L3107_2175) - 2162306..2162881 (-) 576 WP_011677142.1 SIS domain-containing protein -
  L3107_RS11145 (L3107_2176) - 2162943..2163737 (-) 795 WP_014573315.1 GHMP kinase -
  L3107_RS11150 (L3107_2178) - 2163946..2165469 (-) 1524 WP_021164996.1 polysaccharide transporter -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49869.28 Da        Isoelectric Point: 5.2965

>NTDB_id=307370 L3107_RS11125 WP_021164999.1 2159238..2160599(-) (radA) [Lactococcus cremoris strain 3107]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFAEEVEVQEVKNQRVSMSGERSKPMKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=307370 L3107_RS11125 WP_021164999.1 2159238..2160599(-) (radA) [Lactococcus cremoris strain 3107]
ATGGCGAAGAAAAAATCATCTTTTGTTTGTCAAAATTGTGGTTATAAATCTGCAAAGTATCTTGGGCGATGCCCAAATTG
TGGAGAGTGGTCCTCTTTTGCTGAAGAAGTTGAAGTACAGGAAGTCAAAAATCAGCGAGTGTCGATGTCTGGTGAACGTT
CAAAACCAATGAAATTAGATGAAGTTGAGCTTTTTGATACACCACGTATTGAAACAGATCTTGACGAATTTAATCGTGTT
TTAGGTGGTGGTGTTGTTCCTGGTTCACTCGTTTTGATTGGTGGAGACCCAGGAATAGGAAAATCTACGTTGCTTTTGCA
AGTATCGACTCAGCTTGCATCAAGAGGACGGGTTCTCTATGTGAGTGGTGAAGAATCTGCTCAACAAATTAAGCTTAGAG
CGGAACGTTTGGGCGATATTGATCGAGATTTTTATCTTTACGCCGAGACTAACATGCAGTCAATTCGTGCTGAAGTTGAA
CGTTTGAAGCCAAATTTTTTGATTATTGATTCGATCCAAACTATTATGACACCTGAAATTCAATCAACTCAAGGCTCTGT
GAGTCAAGTTCGAGAAGTGACAGGTGAACTCATGCAAATTGCCAAAACGAATGATATTGCTACTTTTATCGTTGGTCATG
TGACGAAAGAAGGTCAATTGGCAGGACCAAGAATGCTAGAGCACATGGTTGATACCGTTCTTTATTTTGAAGGAGAAAGA
AATAATACTTTTAGAATTCTTCGAGCAGTTAAAAACCGGTTTGGGTCAACCAATGAAATTGGTATATTCGAAATGCAAGG
GCATGGTTTAGTTGAAGTAACTAATCCTTCTGAGGTTTTCTTGGAAGAGCGATTAGAGGGTTCAACTGGTTCTGCTATTG
TTTGTGCACTCGAAGGGACACGTCCGATATTAGTTGAAATACAGGCTTTAACTACACCAACAATGTTTGGAAATGCTAAG
AGAACAACTTCTGGTTTAGATTTTAATAGAGTGAGCCTGATTATGGCAGTACTTGAAAAACGGACAGGCTTATTGATGCA
AAATCAAGATGCTTACCTTAAATCAGCTGGGGGAGTAAAATTAGATGAGCCAGCCATTGACCTTGCGGTTGCTGTCGCTG
TAGCCTCAAGTTATAAAGAACTTCCGACGGATGCGCGTGAATGTTTTATTGGTGAAATTGGCTTAACAGGAGAGATTCGT
CGTGTGACGCGAATTGAACAAAGACTGAATGAAGCTGCTAAATTAGGATTCAAAAAAGTCTATGCTCCTAAAAATTCAAT
TGTGGGAATTGATATTCCTGAACAAATAAAAGTAATTGGGGTAACAACCCTAACTGAATGTCTAAAATTAGTATTTGGCT
AA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.795

100

0.808
  radA Streptococcus pneumoniae D39

80.795

100

0.808
  radA Streptococcus pneumoniae R6

80.795

100

0.808
  radA Streptococcus pneumoniae TIGR4

80.795

100

0.808
  radA Streptococcus mitis SK321

80.795

100

0.808
  radA Streptococcus mitis NCTC 12261

80.574

100

0.806
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62

Multiple sequence alignment