Detailed information NTG0307318

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: EYC23_RS04940
• Genome accession: NZ_CP036385
• Coordinates: 1040638..1041813 (+)
• Length: 391 a.a.
• NCBI ID: WP_000060211.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 103A4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1035638..1046813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYC23_RS04915	-	1035881..1036777 (+)	897	WP_000697547.1	OriC activity response regulator	-
EYC23_RS04920	-	1037011..1037868 (+)	858	WP_000482081.1	5'-3' exonuclease	-
EYC23_RS04925	-	1037976..1039226 (-)	1251	WP_001199585.1	hypothetical protein	-
EYC23_RS04930	-	1039394..1040260 (+)	867	WP_000045805.1	DnaJ C-terminal domain-containing protein	-
EYC23_RS04935	-	1040270..1040641 (+)	372	WP_000332994.1	heat shock protein transcriptional repressor HspR	-
EYC23_RS04940	rarA	1040638..1041813 (+)	1176	WP_000060211.1	replication-associated recombination protein A	Machinery gene
EYC23_RS04945	fur	1041974..1042426 (+)	453	WP_000824985.1	ferric iron uptake transcriptional regulator	-
EYC23_RS04950	-	1042445..1042942 (-)	498	WP_000780290.1	DUF2147 domain-containing protein	-
EYC23_RS04955	-	1042939..1043475 (-)	537	WP_000964007.1	YhcH/YjgK/YiaL family protein	-
EYC23_RS04960	fliY	1043504..1044367 (-)	864	WP_001150688.1	flagellar motor switch protein FliY	-
EYC23_RS04965	fliM	1044371..1045435 (-)	1065	WP_000763605.1	flagellar motor switch protein FliM	-
EYC23_RS04970	-	1045428..1046204 (-)	777	WP_000602382.1	RNA polymerase sigma factor FliA	-
EYC23_RS04975	-	1046182..1046496 (-)	315	WP_000647292.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43792.45 Da
• Isoelectric Point: 7.7615

>NTDB_id=307318 EYC23_RS04940 WP_000060211.1 1040638..1041813(+) (rarA) [Helicobacter pylori strain 103A4]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPIVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSGDTHYNLTSALIKSLRGSD
ENASIYYLACLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=307318 EYC23_RS04940 WP_000060211.1 1040638..1041813(+) (rarA) [Helicobacter pylori strain 103A4]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCATTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGGTGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGTGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTTACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.621	100	0.396